MEME

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use MEME in your research, please cite the following paper:
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.

Discovered Motifs   |   Block diagrams of Motifs   |   Program information   |   Explanation

Discovered Motifs

Motif Overview

Motif 1
  • 2.8e-156
  • 185 sites
Motif 1 Logo Motif 1 Logo
Motif 2
  • 1.9e-036
  • 156 sites
Motif 2 Logo Motif 2 Logo
Motif 3
  • 8.5e-005
  • 60 sites
Motif 3 Logo Motif 3 Logo

Further Analysis

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Motif 1

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Summary

Sequence Logo

E-value 2.8e-156
Width 21
Sites 185
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PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

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   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[CGT][TC]TATC[TA][GC][CT][TGCA][GCT][CGT][CATG][CTAG][CGA]CAG[CAG][TCA][GT]

Further Analysis

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Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
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Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
chr4:33329930-33330030 - 26 3.31e-08 AAGCAGGAAT CTTATCAGTTGGCCACAGCCA CACGATCAGG
chr4:134842853-134842953 - 44 4.45e-08 AGCCCCCGGG CTTATCTGTTGTTCCCATCTG CTTCTGGCCT
chr3:94746440-94746540 - 45 4.45e-08 CTGCTTCTCC CTTATCAGCCCCAAGCAGCTT TTGCTAGTGC
chr17:15221049-15221149 - 79 4.45e-08 T CTTATCTACCACTTACAGCTG TGACCATGCT
chr19:38128496-38128596 + 47 4.45e-08 AAACTGGGAG TTTATCAGCTCCCTACAGCTT CGTTCCCCAT
chr16:21791784-21791884 + 29 4.45e-08 ACCGAACCTG CTTATCAGTTCTTCCCAGCAT GCCACACGGA
chr10:53316078-53316178 + 35 5.90e-08 CAAAGCACAC CTTATCTGCTAAATCCAGCAG AGCCAGCAAA
chr16:97228058-97228158 - 20 5.90e-08 CCCAACATCC CCTATCTGTGCTCCGCAGCTG GTAAGCAGAA
chr9:67722597-67722697 - 58 1.01e-07 CTGACAGCTT CTTATCAGTGAGGCCCAGCAG CTGAAGCAGG
chr7:130605664-130605764 - 13 1.01e-07 ATTGTACTCA CTTATCTCTAGGTCACAGACT GGAGGTAGAG
chr7:135998135-135998235 + 41 1.30e-07 TAAGGGGCCG CTTATCTGACGCACACAGATC GGAGCTGCGG
chr5:31099800-31099900 - 65 1.30e-07 GGGGATGAGG CTTATCAAAGGCAGACAGCTG AGCCACTCTG
chr16:96082792-96082892 - 65 1.30e-07 TCCCCTCTCC CTTATCTCTGGAACACAGCCT GAGCGCAAAG
chr11:82659553-82659653 - 8 1.66e-07 CCGCTGACTT TTTATCAGCCCTAACCAGCTG GCTTCTC
chr11:87563537-87563637 + 44 1.66e-07 CTTCCCTCAC CTTATCTTGTATTTCCAGCTG TGTCTTGGGC
chr13:60844588-60844688 - 7 2.10e-07 TCTCAGGGCC CTTATCTGGCTTCTCCAGATT GCCAGT
chr6:122712931-122713031 + 25 2.62e-07 GTATCAGCTG TTTATCTGCAGCCTCCAGATC CCTAGCCTTG
chr2:45027350-45027450 + 25 2.62e-07 TCCGCACTGG TTTATCTCTGACCTGCAGCTT AGCCCCAGTG
chr1:23928421-23928521 - 38 3.26e-07 CTCCCACAGC CCTATCAGCACCGCCCAGCCG GCGGCCCAAG
chr1:167034916-167035016 - 29 3.26e-07 TGCCTCCTGC CTTATCAGTAGCCACCAGACA TGTCCAGAGC
chr19:4558484-4558584 + 48 4.02e-07 CTCCCCTGTA GCTATCTGTCTCCTGCAGCTG GCAGCTTCTG
chr6:11677311-11677411 + 40 4.93e-07 CATGGGCTGG CTTATCAGCTCCAGCCAGAGT GTGCTACTCT
chr13:55646080-55646180 + 4 4.93e-07 TTC CTTATCTAGAACAACCAGCAG GCAGGCTGTG
chr7:146890931-146891031 - 4 5.99e-07 CCTCCTGACT CTTATCTCATGTTCTCAGACG GCA
chr10:82542959-82543059 - 41 7.24e-07 TCTGTGAGTT CTTATCTCTGTGTAACAGAGG AGGAAAGGGC
chr15:89328047-89328147 - 52 7.24e-07 AAGAGTCTCC CTTATCTCCAGGAAGCACCTT GGGAAGCTCG
chr5:35261353-35261453 + 57 7.24e-07 GATAGGAGGT GCTATCTGGGGCTCACAGATG TACTAGTAGT
chr9:113878018-113878118 + 50 7.24e-07 TGGCCACTGA CTTATCAGCTTCTGGCACCTT GTTACCACAG
chr14:32959223-32959323 - 74 7.24e-07 CTTGCA CTTATCTACCCGGGGCAGCCT TGAGTCCAGA
chr16:14307470-14307570 - 13 7.24e-07 GGCAGTGACA GCTATCAGTGGGCAGCAGCTG GGGGCAATAG
chr7:54263929-54264029 - 21 8.70e-07 TGGGACGCCA GTTATCTCCTGGAGGCACCTG ATGTTCTTTT
chr1:174234509-174234609 + 54 8.70e-07 CCTGATAGCT CCTATCTCTTCCTTCCAGCCC CACACCTCAC
chr7:133500481-133500581 - 32 8.70e-07 ACCCCCAAGC ATTATCTCCAGGCGGCAGCAG CTGAGCCTCC
chr7:4477731-4477831 - 29 1.04e-06 AAAAACAGTG ACTATCTGCAGTTTGCAGCTG CTGGCTACCT
chr5:148469390-148469490 + 24 1.04e-06 TGGGAGCTTT CTTATCTCACTCCGGCAGGAG CTGCCGTGGG
chr19:6132339-6132439 + 10 1.04e-06 GTCTTCAGC TTTATCAGGTGACAGCAGCAG CTGGCCTTTT
chr2:172455768-172455868 - 72 1.23e-06 GCAGGACT GTTATCTCTGGGGCACAGGCT GGGAGTGTAG
chr7:75118469-75118569 - 17 1.23e-06 GTTCTTTTAA CTTATCACCTCCTTACAGTCT ATCCAAGCAG
chr4:97496869-97496969 - 32 1.46e-06 ATTCTCAGTA TTTATCTCGGCCTCACAGCCA CACTGCCAGG
chr6:127527680-127527780 + 60 1.46e-06 AGGCTGGCTG CTTATCAAGGCGGGACAGCAG TGACCTGCTG
chr12:102194204-102194304 - 17 1.46e-06 GGCTGGCATA TCTATCTGCCCCAACCAGAAG GCAGTTATCA
chr7:20149164-20149264 - 19 1.46e-06 GCCCTATACT TTTATCTGGACGCCTCAGCTT CATTGCTTAG
chr4:40797723-40797823 - 77 1.46e-06 AGA CTTATCAGGCACGGCCAGCTA ACCCCTGTAG
chr2:172085424-172085524 + 66 1.72e-06 ACAGCAAGCC CTTATCAAAATGGCCCAGCCT CACAAGGCAT
chr7:26474633-26474733 + 47 1.72e-06 CTATCTCTCC CCTATCGGCTACCCCCAGCTG AGATCCCATC
chr19:46802326-46802426 + 46 1.72e-06 CCCGCCTTCC CTTATCTACAGCCTTCAGGCT TTAGCAGATC
chr6:87133950-87134050 + 56 1.72e-06 TGCTGGACTG CTTATCAAGCGCGCCCACCTG CTTCTCAGCT
chr5:23145038-23145138 - 21 2.01e-06 CACACAGCCA CATATCTGGTCCACACAGCCA CATATCTGGT
chr14:32020205-32020305 + 21 2.34e-06 ATGGACAGCG CATATCTCTTCCATCCACCTG CACGTCTGCT
chr11:48901754-48901854 - 72 2.34e-06 GCAGGAGA CGTATCAGCGGGCAGCAGCTG CAGCCAGACT
chr4:128386530-128386630 + 46 2.34e-06 AGCAGCCCAG CTTATCAACCGGGCACAGAGT GTCAATTCAG
chr11:44283011-44283111 + 37 2.34e-06 CTCCTCGCGG CTTATCAAATGCTGTCAGGTG TTAGCGCTTA
chr2:38386455-38386555 + 39 2.34e-06 TGCACCAGAC CTTATCATCTGAAGCCACCTG CTGCCCTGTG
chr19:45150874-45150974 + 39 2.34e-06 CAGCCTTGAC TTTATCTCTGACCTCCAGACC TGGCTTCCCT
chr15:5608737-5608837 + 15 2.71e-06 CTGTCCCATT TTTATCTGTACCGTACAGGGT TTGCTTATCT
chr2:153409358-153409458 - 47 3.13e-06 TCCCCACTTC CCTATCTCTTCTGCCCACCTT GGGCCAGCCC
chr10:126642344-126642444 + 18 3.13e-06 AGAAGCACTG CTTATCTTCTCTTTACACACT TAGGAAGTAC
chr19:8679672-8679772 + 41 3.13e-06 CTGACCTGGA GCTATCTCTTGCTGGCAGCCA GTGGCTCCAG
chr11:50191029-50191129 + 35 3.13e-06 CAGGCGCCCG CTTATCATTTCTCCTCAGCCA CGCCGAGGCT
chr11:4192174-4192274 - 56 3.61e-06 TACGTAGGAT ATTATCAGCACCGTGCAGAAT CCGACAATCA
chr13:54781799-54781899 - 28 3.61e-06 GTGCATGGCA GTTATCAGCTGAGCACAGACC CCCCCAAACT
chr10:75159670-75159770 + 42 3.61e-06 TGATAGTGGC ATTATCTGTGGTTGACAGGTC TGTGTCTGGT
chr1:193915603-193915703 + 21 3.61e-06 GAGAACTCTG TTTATCTCGCTGCGGCAGGCG CGGGGCTCGT
chr5:144654206-144654306 + 14 3.61e-06 GCAGACACAG CCTATCTTTCCCATCCATCTG GCCGCCGAGT
chr11:118261802-118261902 + 12 4.13e-06 TTCCTCTCTG GCTATCACCAGGCAACAGCCT TCTCCTTTCA
chr10:76993954-76994054 + 73 4.13e-06 GGGGCCGGGG GCTATCTTTGATACACAGCTT GGGAGGA
chr18:80452623-80452723 + 30 4.13e-06 TAGGTTTTTC CTAATCTGGGACACGCAGCAG AGCAGAGTGC
chr4:149065061-149065161 - 50 4.13e-06 AGTCATATCC CTTATCTGTACTTTCCACACC TCAGAGGCTG
chr11:57464953-57465053 - 76 4.13e-06 GTCT CCTATCAGCACTCAGCAGAGG GCAGCAGACG
chr13:83483532-83483632 - 41 4.13e-06 ACTGATAAAA TTTATCACTGGGCCACATACG GGAAGGCAGC
chr7:26023121-26023221 + 23 4.13e-06 TATTCTACTT CCTATCAGTTCCTTCCAGTTA CAGTATCTAC
chr2:4491293-4491393 + 21 4.72e-06 GTGCACTCTA CATATCTACAGCACCCATCTG GTTGTGCTTT
chr11:85152848-85152948 - 71 4.72e-06 GGCACTTGT GTTATCTGCCCGAAGCATACG CTGCCTCCAG
chr6:100620323-100620423 - 69 4.72e-06 AAAGAATTGG CTAATCTGATGCTAACAGGAG ACCTGGGAAC
chr9:63606657-63606757 - 1 4.72e-06 TTTCAGCCTC CCTATCAGGCTAGCCCAGATG
chr15:73578438-73578538 + 54 4.72e-06 TTGTTTGCGT GCTATCTTTAGGCAGCAGGTG CGGGAGCCGC
chr9:107209677-107209777 + 44 4.72e-06 GCTGGCCGTT CTTATCTTCTGGAGACACACA TTCTCGATGA
chr13:6641667-6641767 - 65 4.72e-06 CAAAGTGACC TTTATCAGAGGCAGCCAGGAA CCTCAGCATG
chr11:95574671-95574771 - 73 5.37e-06 CATGCGT GTTATCTCCTGGTGCCACAAT ACTCTCGAGG
chr3:84575837-84575937 - 43 5.37e-06 AGCTTATCTG TCTATCTCTGCCGACCAGGAG CCTCTGTCAC
chr1:135704520-135704620 - 28 5.37e-06 GCAGCTGCAG CCTATCAAATGCAGACAGGCT GTTTCACTGC
chr11:106243796-106243896 + 37 5.37e-06 TACACCCCTG CTTATCTGCTGCTTCCTGGCT TCCTCTGCAT
chrX:12647608-12647708 + 27 5.37e-06 ACACCTTCCC CCTATCGGCTGGGTGCAGGTG GCCAAACCCT
chr18:55266559-55266659 - 32 5.37e-06 TCCATTCTGC TGTATCTGCAGTTTCCAGCCG GCCCACATCC
chr7:139685870-139685970 - 46 6.10e-06 AAAACCATAC GTTATCAGCCAAACACAGAGG CCTCCATCCA
chr13:45944944-45945044 + 40 6.10e-06 CTCCCAAGGC CATATCAGCTGCCCTCAGCAC TTGATGCTGA
chr16:58661929-58662029 - 36 6.10e-06 TCGGTTTCCT TTTATCATCCTGAGCCAGAAT GGGTGAGGCT
chr16:91804537-91804637 + 69 6.89e-06 TGCAACACCC TTTATCTTTGCTGTGCAGGGG CAGATAGTTA
chr3:100242317-100242417 - 66 6.89e-06 TCGGAACACC CTTATCTAGACTCTGCATGTG TCAGGCTTGG
chr4:41412087-41412187 + 47 6.89e-06 GGGACCTCGG TTTATCTCTGTGCACCAGAGA GGACTAGGTT
chr5:21206824-21206924 + 37 7.77e-06 CCTTAGTCTC GATATCTGCGTGGAACAGCCT TTCTGGGGCT
chr9:21119120-21119220 - 34 7.77e-06 GGAGTCCTTC CTTATCATCAGCAGACACAGG CAGCCTGGGC
chr11:68902694-68902794 - 68 7.77e-06 CCTGGATCCG CCTATCACCAGAGCACACCTG CCCCAGCTGG
chr16:97128212-97128312 - 63 8.74e-06 GCTCATCACT ACTATCTCTGTTAACCAGAAG CCACAGCTTT
chr4:132300137-132300237 - 38 8.74e-06 TAGATAGGCT GCTATCTCAGGTTCCCAGTTG GCAGCCTGTG
chr13:100524118-100524218 + 36 8.74e-06 CCTTCATTCC CATATCTGACTCCACCATCTG GATGCTGCAG
chr16:13730912-13731012 - 12 8.74e-06 TCGTGTGGGA GTTATCTATCCCGTGCAGTCT GCCTCAGGCT
chr7:130602746-130602846 + 6 8.74e-06 ACTAT CTTATCTTGCTCTCACAGGGA CCAAAGAAAC
chr19:32550414-32550514 - 77 9.80e-06 GTA TTTATCTCCTGTCTGCAACCT CGTTGTTCTC
chr9:65917469-65917569 + 38 9.80e-06 GACCCATGGT GTTATCTTCTGGCCTCAGGAC TTTAGTGAGC
chr8:8489044-8489144 - 61 1.10e-05 TCTTGCCTTT GTTATCTTACAGAACCAGCAC GGGGAGGAAC
chr6:50840691-50840791 - 17 1.10e-05 TGTGATTGCC TTTATCTAACCAGTGCAGGCG CCCTCCTAAT
chr1:183179609-183179709 + 44 1.22e-05 TCCCGCTGGG CTTATCTCTGCCCAGAAGCAG CCTCACCGCA
chr15:79652657-79652757 + 20 1.22e-05 GCAGGCCCAC CTTATCAAACTGTAACAGGAC AGTTGAGAAG
chr3:153515155-153515255 + 55 1.51e-05 TCCTCTGCAC CTTATCACACCTCCTCACACG GCCCACACAG
chr1:176102605-176102705 - 78 1.51e-05 GC ATTATCTCCAGGGGACATATT CAGTTGAGGC
chr2:116821982-116822082 - 21 1.67e-05 TGGTCAGAGG CTTATCGATTGCCATCAGAGG ACAGGAGGAA
chr1:122155712-122155812 + 15 1.85e-05 GGCGTGTGCC CTTATCTACCATTTCCAGTGA AATGATAATA
chr15:25538460-25538560 + 35 1.85e-05 AAACATGCCT GTTATCAGGGCTACTCAGGCA GGCTATCCTC
chr3:83843957-83844057 + 24 1.85e-05 TCCATCCCCT TCTATCTGCGGAGCACACGCG CTCGGGAGCA
chr6:88066198-88066298 - 29 1.85e-05 AGACTGGTAT CATATCTGGGTTTGGCAGTCG CTGGGCCATT
chr18:15503914-15504014 + 58 2.04e-05 GAGCAACTCT GTTATCTGGTTCCTGCATTAT GGGCAGGAGC
chr2:145924694-145924794 - 79 2.04e-05 T CATATCAATGTCATACAGGCC TGAAACCCGG
chr7:111058441-111058541 - 33 2.04e-05 ATCCCAGGAG CTTATCATACTCTGACAACTG TTACCACAGA
chr11:11611663-11611763 + 25 2.04e-05 GGAAGTTGTT TTTATCAGTGAAATGCATCTC TTCTGAAGCG
chr10:75950921-75951021 + 25 2.24e-05 TCGCCTCTTC ACTATCTCTGAACAGCAGCAT GCGGACGACA
chr6:146167847-146167947 + 16 2.24e-05 GAATTGTTCT TTTATCACTTGTGCCCATTCT CCAAGGCTTG
chr17:84050520-84050620 + 8 2.24e-05 CCAAAGA ATTATCACCAAGCCTCAGATC GCACCCCAGG
chr15:57630931-57631031 - 15 2.46e-05 TGCTTTCGCG TCTATCTTTATGCTTCAGCCA TAGCACTTCC
chr12:113882364-113882464 - 35 2.46e-05 TGATAGGTGA GATATCAGTATCAAACAGTAG GGTGGCGGGT
chr6:88202082-88202182 + 46 2.46e-05 AACTGTCTCT CTTATCGGTGGCCCACTGCCT GTCCACGCCA
chr16:17764080-17764180 - 11 2.46e-05 ACCTGGTCTC TTTATCTTATTGTGTCACCTT CAGCACTACA
chr5:75856386-75856486 - 58 2.70e-05 GTGTGCCTAG ATTATCTCAAGACAACACATT AGCCTGGCAC
chr11:106631827-106631927 - 32 2.70e-05 CCCGCCCCGA GCTATCTAAGCCACACACCGG GGTCTGTTGC
chr7:148331608-148331708 - 64 2.70e-05 GCTTCTCCTG CTTATCCTGTGTATCCAGCTG CTTCTACAGC
chr12:8929800-8929900 + 70 2.70e-05 ACCCCAGGGG ACTATCAGACCTCTGCAGGAT TGCAGCTTTT
chr13:43310303-43310403 + 48 2.70e-05 TACCACAGTT CCTATCGGAGACTTCCAGCCC TGAGATACCC
chr2:72125137-72125237 + 40 2.70e-05 TGGCTCAGTG CCTATCTGGGCTCTGCAGTGA AACTGAGTCT
chr7:142785515-142785615 - 15 2.70e-05 CTCTCTGGAT CTCATCTGTGTCCTCCAGACT TCCTGGACCC
chr10:79807688-79807788 + 7 2.95e-05 TGCCCT TTAATCTTAAGAAGCCAGCTG GAATGCGGGT
chr9:64381226-64381326 - 76 2.95e-05 CGCT GCTATCAGGTGCCTGCATACA GCAAGCCTGC
chr14:21893741-21893841 + 77 2.95e-05 GATATGAAGG CCAATCACCTCGCAGCAGGCG CCC
chr15:89115873-89115973 - 7 2.95e-05 CTGGTTGTTG GGTATCTGAAATAGGCAGCAG TGAAGT
chr1:193679251-193679351 - 18 3.52e-05 AAGCTGCTGT CTTATCTCCACAGCCTAGCTG TTCATCCCAT
chr19:6284336-6284436 + 17 3.52e-05 GGCCCACAGA CTTATCTTTTGGCTGAACCAG ACTCCAGCCG
chr17:27995986-27996086 - 43 3.52e-05 GAGTACAATG CATATCAAAGTCTCACAGGAC CAAGGAGTGA
chr9:20693911-20694011 - 15 3.52e-05 GCCGGGCTCT CATATCTACCCTTCTCACCTT GCTGATCTGG
chr8:119469349-119469449 + 20 3.52e-05 TTCAGATTCT CTTATCTAGAGACAGCAGTGA ACGGCCTGGC
chr13:43325034-43325134 + 13 3.83e-05 CCTGTATCAC CTTATCTCCCCCTTCAAGGTC ACGTAGCACA
chr10:11043269-11043369 - 33 3.83e-05 CATGTGTTGG TTTATCTTTTAGGCACACAGC CTCCCTGGAG
chr2:76210235-76210335 + 9 4.16e-05 GGTTCTCA TTTATCTTGCCCCTCCACAGA GTGAGTCACC
chr13:102530165-102530265 - 76 4.16e-05 TTCC TCAATCTCAACCACCCAGAAG ACCAGTTTGG
chr2:35359405-35359505 + 32 4.16e-05 GACAGTCACC AGTATCTATCTACTGCAGCTG TCTTAGGTCA
chr1:39453122-39453222 + 74 4.16e-05 GATGCAGCTG TGTATCAGCTGCGGCCACAAG CTCAAA
chr8:119609333-119609433 - 12 4.52e-05 GAACTGGCCT GTTATCTGCAGAGGACAAACT TCTAGTGACT
chr9:45596473-45596573 - 35 4.52e-05 CCCCAGCAGT TGTATCTGACTCTGACATCTG GGTGGTTAAC
chr10:76621716-76621816 - 39 4.52e-05 ATACGCACCA CATATCTCTCTTACACAAGTG CCCAGCCCCA
chr19:10277565-10277665 + 55 4.52e-05 CGGGACTGAG ACTATCAGGACAGAACAGGTT TCCCTCTGTG
chr10:41984714-41984814 - 14 4.90e-05 GGCTACTCAA GTTATCAGGCAGAAGCAACCT GTACACTCAC
chr8:74792104-74792204 + 74 4.90e-05 GCTGCCAGTG GCTATCGGCAGGAAACATCTT AGCAAG
chr4:21702997-21703097 + 22 4.90e-05 GGCTGGCACT GTAATCAGTTGGCTGCAGGGC GCCATCCCCT
chr19:5928059-5928159 - 60 4.90e-05 CAGGCAGTAC TTAATCTCCAGTTGGCAGGCA GTACTTCATG
chr8:13108241-13108341 + 62 5.74e-05 CTCCTCCACC TCTATCTAGAAGGAGCAGCGC ATTTGCAGTC
chr19:41556572-41556672 - 13 5.74e-05 TTCCTACCTG CCTATCGGCCCGCACCAACTG TTGCAAGTTC
chr12:17512797-17512897 - 71 5.74e-05 CTTCTTCCT CTAATCAGCCTTGGTCACCTG ACCTGGATGT
chr14:79695936-79696036 + 45 6.20e-05 ACATGTCTGT GCTATCAGCCAGAGGCACACC GTTGTCATTT
chr11:77981917-77982017 + 4 6.20e-05 GCT CTTATCAGTGACCTGCTCCCC TCGCCCACTG
chr9:59136456-59136556 - 38 6.69e-05 ATACTGCCCT CTAATCAGGTGTTTGCTGATG CCAGGAGCCC
chr1:162965054-162965154 + 12 6.69e-05 TCACGAAGAC CTTATATACTCGACTCAGCCG CCATCTCAGC
chr5:124460758-124460858 + 41 6.69e-05 GGACTCTCTG CTTAGCTTATCTGCCCAGCCT GTAGGCCATC
chr18:65149099-65149199 + 44 6.69e-05 TCCCAGGTCA GCTATCACATTCTTTCAGAGA CAGCAGCTAC
chr7:148744188-148744288 - 21 6.69e-05 CTGGGTTTGT AATATCTTATCTAGCCACATG TGTATATGCT
chr12:56331049-56331149 + 63 7.76e-05 CCCTTCTACC CTTATCGGGGGGAGCCATAGA CACGGGCCTT
chr13:90028659-90028759 - 69 7.76e-05 CAGAATTTCC AGTATCTCTAATGCACAGGCT CGCCTAGCTG
chr9:78354152-78354252 + 16 8.35e-05 TGCCGCTCTC CTTATCATCTTCTGCCTGTTC CCTTCTTTAT
chr11:4060161-4060261 + 66 8.35e-05 GTGGTGATCT TTAATCTTGTCGTCGCACCGG TTGTCGCCAC
chr7:148771207-148771307 + 20 8.35e-05 GGGACACACT GATATCTCTGTAGAGCAGGAC ATGTCAGAGC
chr9:124052647-124052747 + 31 8.35e-05 TTATGAGTTC TTTATCATTCTTGCCCACTAA TTCTACTGCC
chr2:131322847-131322947 + 8 8.97e-05 GGCACCT TATATCTACTTGCAGCATAGT CTGGTGGGGT
chr4:118700929-118701029 - 65 8.97e-05 CCAGATACCA ACTATCTCATTTTCGCATTAG CACAGCTTGT
chr7:19911114-19911214 + 19 9.63e-05 TCCCCATCGC CTCATCTCGGTTTCACATCTG TAAACGTGGG
chr15:6655348-6655448 + 33 9.63e-05 CAGTTTCAGG ATTATCAACTGTGTGTAGCAG GACGGGGGAT
chr5:77548404-77548504 + 20 1.11e-04 GTGTGGTAGC CTTATCGGGCACCTACTGCAA TGTGCGGCTG
chr6:56854908-56855008 - 29 1.11e-04 GCCACTGCAG GCAATCATGTACACACACCTG TGCCACTGCA
chr4:151104068-151104168 + 15 1.18e-04 GTGCACTAAC AGTATCAGTTGTGTGCAGTAC GGTTGTGACA
chr1:170237894-170237994 - 5 1.27e-04 AACCCGCCTC ATTATCGCCGCGCCTCACACT GCTC
chr14:100246702-100246802 - 58 1.27e-04 CTCAGGGTGT GATATCTCTTTAGGCCATGAT AGCTAGATTT
chr5:130620013-130620113 + 34 1.45e-04 CATAGCGGAG CTAATCGGACACTGCCAGTAG TAGGAGGCGA
chr10:80597961-80598061 + 68 1.45e-04 ACTGTTTTAT GTAATCGCGGGGCGGCAGGTT TGCTGGCTGG
chr4:128933599-128933699 - 31 1.54e-04 ACTGTCTGAC ACTATCTGAGAAGCACACGAA GCTCAGGCAG
chr13:41113134-41113234 + 38 1.75e-04 GTGGGTGGGT GTTATCGACCATTGCCATACA CCGCGTTGTC
chr11:52045279-52045379 - 13 1.87e-04 CGTCGCCTTT TATAGCAGCGGGACGCAGGCG CCGAGGACCC
chr13:23789994-23790094 - 34 1.87e-04 TGCCCTGGAT GTTATCACGGAGAACCTTACG GTGGCGCTTA
chr11:94858849-94858949 + 37 1.87e-04 GCCACACACC CTTATCTGTATGCACAATAGC CTACCACACC
chr1:153024102-153024202 - 30 1.99e-04 GATGTCTTTG GTTATCTGTATGTACCTTGAC TCTGCTGCTG

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
chr19:4558484-4558584 4.02e-07
+
-
chr16:14307470-14307570 7.24e-07
+
-
chr6:87133950-87134050 1.72e-06
+
-
chr16:17764080-17764180 2.46e-05
+
-
chr13:60844588-60844688 2.10e-07
+
-
chr7:142785515-142785615 2.70e-05
+
-
chr19:45150874-45150974 2.34e-06
+
-
chr11:68902694-68902794 7.77e-06
+
-
chr7:26023121-26023221 4.13e-06
+
-
chr18:55266559-55266659 5.37e-06
+
-
chr7:148744188-148744288 6.69e-05
+
-
chr12:17512797-17512897 5.74e-05
+
-
chr19:5928059-5928159 4.90e-05
+
-
chr6:88202082-88202182 2.46e-05
+
-
chr19:6132339-6132439 1.04e-06
+
-
chr7:130602746-130602846 8.74e-06
+
-
chr2:72125137-72125237 2.70e-05
+
-
chr11:11611663-11611763 2.04e-05
+
-
chr5:23145038-23145138 2.01e-06
+
-
chr13:6641667-6641767 4.72e-06
+
-
chr10:80597961-80598061 1.45e-04
+
-
chr1:153024102-153024202 1.99e-04
+
-
chr18:65149099-65149199 6.69e-05
+
-
chr7:133500481-133500581 8.70e-07
+
-
chr16:97228058-97228158 5.90e-08
+
-
chr9:107209677-107209777 4.72e-06
+
-
chr4:40797723-40797823 1.46e-06
+
-
chr13:90028659-90028759 7.76e-05
+
-
chr13:83483532-83483632 4.13e-06
+
-
chr8:119469349-119469449 3.52e-05
+
-
chrX:12647608-12647708 5.37e-06
+
-
chr4:118700929-118701029 8.97e-05
+
-
chr7:146890931-146891031 5.99e-07
+
-
chr15:79652657-79652757 1.22e-05
+
-
chr4:41412087-41412187 6.89e-06
+
-
chr15:89115873-89115973 2.95e-05
+
-
chr1:176102605-176102705 1.51e-05
+
-
chr19:41556572-41556672 5.74e-05
+
-
chr9:20693911-20694011 3.52e-05
+
-
chr11:77981917-77982017 6.20e-05
+
-
chr11:87563537-87563637 1.66e-07
+
-
chr16:21791784-21791884 4.45e-08
+
-
chr6:88066198-88066298 1.85e-05
+
-
chr7:111058441-111058541 2.04e-05
+
-
chr8:13108241-13108341 5.74e-05
+
-
chr11:50191029-50191129 3.13e-06
+
-
chr7:75118469-75118569 1.23e-06
+
-
chr14:100246702-100246802 1.27e-04
+
-
chr7:20149164-20149264 1.46e-06
+
-
chr3:83843957-83844057 1.85e-05
+
-
chr11:106243796-106243896 5.37e-06
+
-
chr15:73578438-73578538 4.72e-06
+
-
chr14:79695936-79696036 6.20e-05
+
-
chr2:38386455-38386555 2.34e-06
+
-
chr16:13730912-13731012 8.74e-06
+
-
chr5:124460758-124460858 6.69e-05
+
-
chr1:174234509-174234609 8.70e-07
+
-
chr1:39453122-39453222 4.16e-05
+
-
chr15:25538460-25538560 1.85e-05
+
-
chr6:56854908-56855008 1.11e-04
+
-
chr14:32959223-32959323 7.24e-07
+
-
chr13:43310303-43310403 2.70e-05
+
-
chr4:21702997-21703097 4.90e-05
+
-
chr8:74792104-74792204 4.90e-05
+
-
chr11:57464953-57465053 4.13e-06
+
-
chr16:96082792-96082892 1.30e-07
+
-
chr9:124052647-124052747 8.35e-05
+
-
chr19:46802326-46802426 1.72e-06
+
-
chr5:148469390-148469490 1.04e-06
+
-
chr9:113878018-113878118 7.24e-07
+
-
chr12:8929800-8929900 2.70e-05
+
-
chr7:148771207-148771307 8.35e-05
+
-
chr19:10277565-10277665 4.52e-05
+
-
chr2:131322847-131322947 8.97e-05
+
-
chr10:11043269-11043369 3.83e-05
+
-
chr4:149065061-149065161 4.13e-06
+
-
chr1:135704520-135704620 5.37e-06
+
-
chr7:148331608-148331708 2.70e-05
+
-
chr12:113882364-113882464 2.46e-05
+
-
chr19:38128496-38128596 4.45e-08
+
-
chr11:4060161-4060261 8.35e-05
+
-
chr2:45027350-45027450 2.62e-07
+
-
chr2:145924694-145924794 2.04e-05
+
-
chr2:116821982-116822082 1.67e-05
+
-
chr5:35261353-35261453 7.24e-07
+
-
chr5:144654206-144654306 3.61e-06
+
-
chr5:130620013-130620113 1.45e-04
+
-
chr1:162965054-162965154 6.69e-05
+
-
chr3:84575837-84575937 5.37e-06
+
-
chr10:41984714-41984814 4.90e-05
+
-
chr4:33329930-33330030 3.31e-08
+
-
chr17:84050520-84050620 2.24e-05
+
-
chr9:63606657-63606757 4.72e-06
+
-
chr1:167034916-167035016 3.26e-07
+
-
chr2:35359405-35359505 4.16e-05
+
-
chr7:130605664-130605764 1.01e-07
+
-
chr1:183179609-183179709 1.22e-05
+
-
chr6:50840691-50840791 1.10e-05
+
-
chr15:5608737-5608837 2.71e-06
+
-
chr9:65917469-65917569 9.80e-06
+
-
chr11:94858849-94858949 1.87e-04
+
-
chr4:128933599-128933699 1.54e-04
+
-
chr5:31099800-31099900 1.30e-07
+
-
chr1:193915603-193915703 3.61e-06
+
-
chr13:102530165-102530265 4.16e-05
+
-
chr19:8679672-8679772 3.13e-06
+
-
chr13:23789994-23790094 1.87e-04
+
-
chr12:56331049-56331149 7.76e-05
+
-
chr9:67722597-67722697 1.01e-07
+
-
chr15:6655348-6655448 9.63e-05
+
-
chr11:82659553-82659653 1.66e-07
+
-
chr11:44283011-44283111 2.34e-06
+
-
chr11:106631827-106631927 2.70e-05
+
-
chr3:100242317-100242417 6.89e-06
+
-
chr13:100524118-100524218 8.74e-06
+
-
chr14:21893741-21893841 2.95e-05
+
-
chr9:64381226-64381326 2.95e-05
+
-
chr9:21119120-21119220 7.77e-06
+
-
chr4:132300137-132300237 8.74e-06
+
-
chr18:80452623-80452723 4.13e-06
+
-
chr7:26474633-26474733 1.72e-06
+
-
chr15:89328047-89328147 7.24e-07
+
-
chr16:91804537-91804637 6.89e-06
+
-
chr10:75159670-75159770 3.61e-06
+
-
chr13:55646080-55646180 4.93e-07
+
-
chr5:21206824-21206924 7.77e-06
+
-
chr6:146167847-146167947 2.24e-05
+
-
chr17:27995986-27996086 3.52e-05
+
-
chr17:15221049-15221149 4.45e-08
+
-
chr12:102194204-102194304 1.46e-06
+
-
chr10:53316078-53316178 5.90e-08
+
-
chr13:41113134-41113234 1.75e-04
+
-
chr1:23928421-23928521 3.26e-07
+
-
chr10:76993954-76994054 4.13e-06
+
-
chr5:77548404-77548504 1.11e-04
+
-
chr13:54781799-54781899 3.61e-06
+
-
chr4:128386530-128386630 2.34e-06
+
-
chr7:135998135-135998235 1.30e-07
+
-
chr9:59136456-59136556 6.69e-05
+
-
chr10:75950921-75951021 2.24e-05
+
-
chr8:8489044-8489144 1.10e-05
+
-
chr11:118261802-118261902 4.13e-06
+
-
chr5:75856386-75856486 2.70e-05
+
-
chr6:122712931-122713031 2.62e-07
+
-
chr10:76621716-76621816 4.52e-05
+
-
chr2:76210235-76210335 4.16e-05
+
-
chr9:45596473-45596573 4.52e-05
+
-
chr10:82542959-82543059 7.24e-07
+
-
chr3:94746440-94746540 4.45e-08
+
-
chr10:79807688-79807788 2.95e-05
+
-
chr8:119609333-119609433 4.52e-05
+
-
chr15:57630931-57631031 2.46e-05
+
-
chr7:4477731-4477831 1.04e-06
+
-
chr6:11677311-11677411 4.93e-07
+
-
chr11:48901754-48901854 2.34e-06
+
-
chr16:58661929-58662029 6.10e-06
+
-
chr18:15503914-15504014 2.04e-05
+
-
chr6:127527680-127527780 1.46e-06
+
-
chr9:78354152-78354252 8.35e-05
+
-
chr10:126642344-126642444 3.13e-06
+
-
chr6:100620323-100620423 4.72e-06
+
-
chr4:151104068-151104168 1.18e-04
+
-
chr4:134842853-134842953 4.45e-08
+
-
chr11:95574671-95574771 5.37e-06
+
-
chr11:52045279-52045379 1.87e-04
+
-
chr11:85152848-85152948 4.72e-06
+
-
chr16:97128212-97128312 8.74e-06
+
-
chr3:153515155-153515255 1.51e-05
+
-
chr2:153409358-153409458 3.13e-06
+
-
chr13:45944944-45945044 6.10e-06
+
-
chr7:139685870-139685970 6.10e-06
+
-
chr19:6284336-6284436 3.52e-05
+
-
chr7:19911114-19911214 9.63e-05
+
-
chr11:4192174-4192274 3.61e-06
+
-
chr13:43325034-43325134 3.83e-05
+
-
chr2:172455768-172455868 1.23e-06
+
-
chr1:122155712-122155812 1.85e-05
+
-
chr2:172085424-172085524 1.72e-06
+
-
chr4:97496869-97496969 1.46e-06
+
-
chr14:32020205-32020305 2.34e-06
+
-
chr19:32550414-32550514 9.80e-06
+
-
chr1:170237894-170237994 1.27e-04
+
-
chr1:193679251-193679351 3.52e-05
+
-
chr2:4491293-4491393 4.72e-06
+
-
chr7:54263929-54264029 8.70e-07
+
-
 
0
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40
60
80
100

Time 512.3 secs.

Motif 2

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Summary

Sequence Logo

E-value 1.9e-036
Width 8
Sites 156
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[AT]GATAA[GA][GAC]

Further Analysis

Submit this motif to  
      
      
      
      
 Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
chr8:86180315-86180415 + 75 1.35e-05 GCTGCCAGCA AGATAAGG GTCAGGAGCA
chr18:57996495-57996595 + 79 1.35e-05 CTGTAGCCCG AGATAAGG ATTGGAGGGC
chr16:45025349-45025449 + 44 1.35e-05 GGCCCCAATC AGATAAGG GCCTGGGTGC
chr1:128547288-128547388 - 12 1.35e-05 GGGTCATAAA AGATAAGG GCTCTGCTGT
chr19:10736323-10736423 - 13 1.35e-05 GGGACGGTTG AGATAAGG CATTTGCTTC
chr14:56204398-56204498 - 16 1.35e-05 CCTGCACCAT AGATAAGG AGCCTAATCT
chr14:21893741-21893841 + 58 1.35e-05 TTGCTGCCAG AGATAAGG GGATATGAAG
chr18:61665353-61665453 + 26 1.35e-05 AGGAGTGAAG AGATAAGG ACCCCGGCCC
chr6:28374174-28374274 - 75 1.35e-05 GGTCAGGGAC AGATAAGG GCCTAGGCAG
chr9:21728457-21728557 - 25 1.35e-05 CTAGTGGAGA AGATAAGG CTGGACAGAG
chr8:74792104-74792204 + 57 1.35e-05 CCCAGGTCAT AGATAAGG CTGCCAGTGG
chr4:134307760-134307860 + 86 1.35e-05 CTGGGGAGCA AGATAAGG ATGTGGA
chr11:11909979-11910079 + 82 1.35e-05 AACAGAGAGC AGATAAGG ATGAGCGGCA
chr2:36054026-36054126 + 49 1.35e-05 CTGCAGGACT AGATAAGG ACGCTTGCCA
chr4:138735755-138735855 + 17 1.35e-05 GCAAAGGAAG AGATAAGG TGTACAAAGT
chr17:24745767-24745867 - 19 1.35e-05 GCGCAGCGGT AGATAAGG CCTTGTTCCA
chr18:55266559-55266659 + 88 1.35e-05 TGTCTCTCTG AGATAAGG AATGG
chr2:91790034-91790134 + 64 1.35e-05 CACCATCTCC AGATAAGG GCTTCCCTGC
chr3:84457995-84458095 + 53 1.35e-05 GCTACAAGGG AGATAAGG GACAAATAGA
chr6:90699987-90700087 + 67 1.35e-05 GACATGGCAG AGATAAGG GTGAACTCCA
chr10:76622272-76622372 - 75 2.55e-05 GAAGCACCCA AGATAAGA ACCGTGAGAA
chr1:174438255-174438355 + 48 2.55e-05 GCTGTGGCAC AGATAAGA CAGGCTGCAG
chr9:59136456-59136556 - 11 2.55e-05 CTGCCAGCCA AGATAAGA ACAGAACTTT
chr17:48411499-48411599 - 85 2.55e-05 ACCTCATT AGATAAGA AGCCACCAAG
chr11:57464953-57465053 - 45 2.55e-05 ACCACGGGAA AGATAAGA GAGAAGAGGG
chr2:35686985-35687085 + 69 2.55e-05 CTGTGACTGC AGATAAGA GACCAACCCC
chr2:156708077-156708177 - 12 2.55e-05 GGTACTTGAG AGATAAGA GGCTTAGGTG
chr3:153354476-153354576 + 67 2.55e-05 CTTGTAAGAC AGATAAGA GAGAAGCAAG
chr5:115234472-115234572 - 91 2.55e-05 AC AGATAAGA ACTGTTATCG
chr19:6284336-6284436 + 76 3.90e-05 ACACAGCCTC AGATAAGC GACAATAGTT
chr5:124716796-124716896 + 17 3.90e-05 ACAGGAAGCT AGATAAGC AGCTGGAGGA
chr6:120124421-120124521 + 64 3.90e-05 CTGCAGGTTA AGATAAGC TGAGCTGAGA
chr13:73612780-73612880 - 18 3.90e-05 CTTGAGTTCT AGATAAGC TCAGAAGAAA
chr11:78883299-78883399 + 55 3.90e-05 CTGTGCTCTG AGATAAGC ACCTTGTTTG
chr15:5608737-5608837 - 38 3.90e-05 TGAGACGTCC AGATAAGC AAACCCTGTA
chr19:24609128-24609228 - 8 3.90e-05 CTGCTTGGAG AGATAAGC CAGGAGG
chr3:84575837-84575937 + 65 3.90e-05 AGAGATAGAC AGATAAGC TATGGGGGAG
chr3:108554629-108554729 - 73 3.90e-05 GGCATGATAA AGATAAGC AATGCGCCCT
chr19:53965082-53965182 - 66 3.90e-05 CTTGGAACTC AGATAAGC TTCCCAGGGA
chr18:61856587-61856687 + 4 3.90e-05 CTT AGATAAGC AGACAGCAGA
chr5:30220276-30220376 + 67 3.90e-05 GCTGACCTCA AGATAAGC ACCAGTTCCT
chr7:20149164-20149264 - 3 3.90e-05 TTCATTGCTT AGATAAGC CC
chr2:92284511-92284611 - 30 3.90e-05 GTGCTTAGTG AGATAAGC AGCAATCAGG
chr15:89115873-89115973 - 74 3.90e-05 GCCACAAAAG AGATAAGC AGATAGGAGC
chr17:26098344-26098444 + 32 3.90e-05 GAGCTGGTCT AGATAAGC AGCTTGTCTG
chr9:95451259-95451359 + 81 3.90e-05 CTGACTCTGC AGATAAGC CCTCTCCTCT
chr11:67481111-67481211 + 62 3.90e-05 TATGCTCCTA AGATAAGC AGCCTGCTCC
chr11:72288850-72288950 - 43 3.90e-05 CTGTCCACAG AGATAAGC CTGGTGGGAC
chr18:62270480-62270580 - 71 3.90e-05 GAGCTCTCTG AGATAAGC CAGCACCAGC
chr11:104890232-104890332 - 69 3.90e-05 GCGGGAATGG AGATAAGC AAAGCCAGGT
chr15:100504223-100504323 + 45 5.25e-05 GCTGGGAAGC TGATAAGG CTGCTGTGCC
chr1:43577752-43577852 + 60 5.25e-05 GTGTGCCATG TGATAAGG AGCCTCCTCG
chr1:75446881-75446981 + 54 5.25e-05 GTGCGGGTGC TGATAAGG GAAGCCACAA
chr2:130461363-130461463 + 61 5.25e-05 GCGGCCCAGC TGATAAGG CAACGGGAAG
chr2:120272043-120272143 - 48 5.25e-05 CTGGAGCTCC TGATAAGG GTGCCCTGTT
chr15:66649814-66649914 - 18 5.25e-05 GCCTGGCTGG TGATAAGG CCACTGTGCT
chr7:91871204-91871304 + 52 5.25e-05 GTGCTAAGAC TGATAAGG GCCACCATAC
chr11:95696359-95696459 - 53 5.25e-05 GGGCACAGTG TGATAAGG TCCCCTCCGC
chr8:119802083-119802183 - 71 5.25e-05 GCATGCTACA TGATAAGG AGGGAACCTG
chr7:73341370-73341470 + 34 5.25e-05 GCTGGGTGGC TGATAAGG TTATCTGGGG
chr2:33709073-33709173 + 30 5.25e-05 GTTCCTCTGA TGATAAGG ACTGTCTCCC
chr14:77256350-77256450 + 60 5.25e-05 GGAAACACAC TGATAAGG AAGGAAATAA
chr4:100919100-100919200 + 12 5.25e-05 GGAGGGGTCT TGATAAGG TCTCCCTGGG
chr19:32550414-32550514 + 13 6.45e-05 ACAAAATGTT AGATAAAG CACTGGACAG
chr11:4192174-4192274 - 1 6.45e-05 AACCAGAGAG AGATAAAG
chr9:78354152-78354252 - 41 6.45e-05 AATGAGGGGG AGATAAAG AAGGGAACAG
chr14:56011135-56011235 - 48 6.45e-05 TTGTCTGGCG AGATAAAG AGGGACAGGA
chr2:91474916-91475016 - 40 6.45e-05 ACAGGTGACA AGATAAAG ATAAAGGCAG
chr7:129161663-129161763 + 68 6.45e-05 CTGGGGAAGG AGATAAAG GTGGTTGCAC
chr10:84038676-84038776 - 26 6.45e-05 CTGTGCACAA AGATAAAG TGTCTTACTT
chr6:88709720-88709820 - 4 6.45e-05 TTGGAACCTG AGATAAAG GAG
chr5:144865906-144866006 + 47 6.45e-05 TAGCAGTTCC AGATAAAG GCCCTCCCGG
chr2:30627488-30627588 - 51 6.45e-05 CAGCGGGTGG AGATAAAG CGAGGTAAAC
chr4:106286046-106286146 + 54 6.45e-05 CTGGACTTGG AGATAAAG GAGTGAGCAG
chr14:41820884-41820984 + 74 6.45e-05 CATGGGGATC AGATAAAG CTCCCCCCAC
chr16:98019483-98019583 - 89 6.45e-05 CCTC AGATAAAG GCTACTTCCT
chrX:146984108-146984208 - 87 6.45e-05 GACCAT AGATAAAG CCCCTAGAGC
chr5:132289976-132290076 + 30 7.65e-05 CTGGTCCTTC TGATAAGA TTGTGTGGAG
chr2:153351445-153351545 + 43 7.65e-05 GATCTTTCTA TGATAAGA GCTAGCCAGG
chr11:109418579-109418679 - 32 7.65e-05 GTGCTATTCC TGATAAGA CCGTGGCCAG
chr7:71041678-71041778 + 53 7.65e-05 TTGTGTTCCC TGATAAGA TGAGGCAATC
chr18:34679003-34679103 - 36 7.65e-05 GCTCAGGGAC TGATAAGA GACACCCCAG
chr2:131049288-131049388 - 26 7.65e-05 GGCCTTGACA TGATAAGA GAGCAGAGCC
chr10:80569130-80569230 - 30 7.65e-05 CTGGCCAACC TGATAAGA CCACCAGCCT
chr8:126502851-126502951 - 54 7.65e-05 GTAACCACAG TGATAAGA GTAGCACTCA
chr9:48531700-48531800 + 72 7.65e-05 GTTCTCTGTC TGATAAGA GGTACTGTAA
chr11:44283011-44283111 - 63 1.01e-04 GTATGTGTTT TGATAAGC GCTAACACCT
chr4:118863109-118863209 + 85 1.01e-04 GTGTAGCTGG AGATAAAA GCCGTGGC
chr18:60661906-60662006 + 53 1.01e-04 GTGTGTGGGG AGATAAAA GTCAAGGCTG
chr11:64614757-64614857 - 91 1.01e-04 GG AGATAAAA CCACTTCCTG
chr14:35436548-35436648 - 9 1.01e-04 GCCGGCTTCG TGATAAGC ACCCAGCT
chr10:66645795-66645895 + 74 1.01e-04 CTGTGCCCCG AGATAAAA TCAAAATAAC
chr9:64584256-64584356 - 12 1.01e-04 CAGTCCACAG TGATAAGC TCGCTAGTAT
chr19:6300495-6300595 - 37 1.13e-04 TCTGGATCTA AGATAAAC ACCTGTTTTT
chr16:92709037-92709137 + 7 1.13e-04 ATTTCC AGATAAAC ACACTGTAGG
chr11:58977073-58977173 - 44 1.13e-04 GCGCAAGCCC AGATAAAC ACCAAGGCTA
chr15:34615448-34615548 - 38 1.38e-04 GTGTCTTACC TGATAAAG AGAGCAGGGC
chr6:88202082-88202182 - 8 1.38e-04 TGGGGACCAC TGATAAAG CAGACAA
chr16:96082971-96083071 - 88 1.38e-04 GAGGA AGATAACG GGAAAGGCTG
chr11:109472892-109472992 + 67 1.38e-04 CTGTTCCCAG TGATAAAG AGGCGGGGTG
chr1:170237894-170237994 + 62 1.73e-04 GGCCCCTTAC AGATAACA GCCCCCTCCG
chr13:45944944-45945044 - 73 1.73e-04 CAGCTGAAGG AGATAACA CCTCAGCATC
chr1:82812370-82812470 + 89 1.73e-04 CTGGAGTGTG AGATAATG CCGT
chr10:61699880-61699980 - 17 1.73e-04 GCTGGATGGT TGATAAAA GAAAGACTGT
chr9:22257848-22257948 + 79 1.73e-04 ATTGTGTGAC AGATAACA AGCAGCTAAT
chr11:86556026-86556126 + 2 1.73e-04 C AGATAATG AAATGCAATG
chr18:64702734-64702834 - 7 1.73e-04 ATGCGCGCAT TGATAAAA AGCAAG
chr9:64381226-64381326 - 45 1.73e-04 CCGCGGGGCC TGATAAAA GCCATGGCAT
chr3:94469792-94469892 - 9 1.73e-04 CTGGACCCAA AGATAACA CACAACAG
chr1:134270749-134270849 - 9 1.73e-04 CTGTCACTGG AGATAACA CCTACAAG
chr1:158675176-158675276 + 70 1.73e-04 AGAGCAGATT AGATAACA GGGCTGTGTT
chr15:6655348-6655448 + 13 1.73e-04 TGCCTCGAAC TGATAAAA TACAGTTTCA
chr14:118950913-118951013 + 67 1.73e-04 CGTGGAAGAC AGATAACA TTAAGCCCAT
chr15:80877857-80877957 + 44 1.73e-04 CCTCCGCACC AGATAATG AACCCAGGAG
chr6:84277910-84278010 + 70 1.73e-04 CTGGCTTTCC AGATAATG CACTTTCAAC
chr2:27997074-27997174 + 14 1.73e-04 TGGTTGCAGA AGATAACA AGGCAAGTAA
chr14:32074025-32074125 + 88 1.73e-04 GGCAAGAGCC AGATAACA GCCAT
chr14:79695936-79696036 - 73 1.73e-04 TCAGTCAGTC TGATAAAA TGACAACGGT
chr13:83483532-83483632 - 62 1.73e-04 CGCTGACCAC TGATAAAA TTTATCACTG
chr16:90964469-90964569 - 12 1.73e-04 GTCACTGACC TGATAAAA GGAGCGTGCT
chr5:3512585-3512685 + 72 1.73e-04 CTGGGCACAG AGATAACA CAGGTGGTTG
chr11:11611663-11611763 - 82 1.73e-04 AGATGCTGCC AGATAATG CTGCTTCTAG
chr7:148580006-148580106 - 76 1.99e-04 ACAGCTGCAG AGATAACC AGAGCAGGCC
chr18:62336137-62336237 - 46 1.99e-04 TCACCTCTAC TGATAAAC CCTCCCAAAT
chr7:148091398-148091498 + 42 1.99e-04 AGCGCTTATT AGATAACC CTGTAGCAGA
chr6:118783022-118783122 - 15 1.99e-04 GAACTCTCCA TGATAAAC CACAGGGCAC
chr13:36209360-36209460 - 54 1.99e-04 ACGATGACAC TGATAAAC TCAGGCTGCC
chr17:47672673-47672773 - 34 1.99e-04 GAGGGGCCCC TGATAAAC AGCTGGAGCC
chr10:17309926-17310026 + 53 1.99e-04 TGGTCACTGA TGATAAAC AGCCCAGGAT
chr10:60875932-60876032 - 63 1.99e-04 CTGACCTGAG AGATAACC TCTGAGGCCC
chr5:136620406-136620506 + 64 1.99e-04 GCACTCTCCC AGATAACC AGGTGCATGC
chr7:87180520-87180620 - 26 1.99e-04 GAAGGAGCCG TGATAAAC CATATCCAAG
chr1:153024102-153024202 + 71 1.99e-04 CTGCAGAAAT AGATAACC CAGCCAGCCT
chr2:153308822-153308922 + 15 2.23e-04 GGGGGAGCAC AGATAATA AGAATCGCAG
chr6:7647936-7648036 - 56 2.23e-04 GGCACAGACA AGATAATA TAATGTTTGA
chr11:87181608-87181708 + 32 2.23e-04 GTGTGGTAAT TGATAACG TCTGTGCCAC
chr12:113861904-113862004 + 12 2.35e-04 AGGAACCTAC AGATAATC AGGCCAGAAT
chr7:16987257-16987357 + 37 2.59e-04 CTCTGGCGGG TGATAATG GGACCAGCCC
chr8:87424941-87425041 + 78 2.59e-04 CTGGTGTGTC TGATAATG CCTGAAAGGG
chr4:46054738-46054838 - 45 2.59e-04 GGCTTTAAAC TGATAATG ACTCCTAGCA
chr16:91804537-91804637 + 25 2.59e-04 AGCTGTTGCT TGATAACA CTCTGGAAGA
chr16:31426693-31426793 - 9 2.59e-04 CTGTTTGCTG TGATAATG CTGACATA
chr18:74888819-74888919 + 80 2.59e-04 TCCCTGGAGC TGATAACA GCCAACTGCT
chr15:77761992-77762092 - 36 2.59e-04 CAGCTGTTGC TGATAATG CCAGGAGCCA
chr5:135389547-135389647 + 8 2.73e-04 CTGATAC TGATAACC ACCTGCTCCT
chr4:101327339-101327439 - 6 2.73e-04 TCAGTCAGGA TGATAACC AGGAA
chr8:122893817-122893917 - 36 2.73e-04 ATGTCCAAGC TGATAACC CTTCCTGGAG
chr4:62177544-62177644 + 34 2.73e-04 GTGTGGTTCC TGATAACC TCAACCCCAG
chr2:153280813-153280913 + 41 2.73e-04 GCAGGGCTGC TGATAACC TATCGTGGGC
chr8:74035521-74035621 + 53 2.73e-04 GGGAGTGTTG TGATAACC CACAGTCCCC
chr11:104154532-104154632 + 13 2.73e-04 GTGTCTGAGC TGATAACC CGTCGGGTGG
chr1:122155712-122155812 + 38 2.83e-04 TCCAGTGAAA TGATAATA GAGCGGTCTG
chr13:44597102-44597202 - 93 2.83e-04 TGATAATA GGCTGAACAG
chr7:134280807-134280907 + 67 2.83e-04 CTGTTGTCTC TGATAATA GTGAAAGCAA
chr18:78104155-78104255 - 28 2.83e-04 ATGAGCTACT TGATAATA ACCACCACCC
chr1:195490685-195490785 + 9 2.95e-04 TGAGATGT TGATAATC TACAGACACC

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
chr6:90699987-90700087 1.35e-05
+
-
chr11:109472892-109472992 1.38e-04
+
-
chr3:84457995-84458095 1.35e-05
+
-
chr9:64584256-64584356 1.01e-04
+
-
chr2:91790034-91790134 1.35e-05
+
-
chr16:96082971-96083071 1.38e-04
+
-
chr4:100919100-100919200 5.25e-05
+
-
chr11:104890232-104890332 3.90e-05
+
-
chr10:66645795-66645895 1.01e-04
+
-
chrX:146984108-146984208 6.45e-05
+
-
chr18:55266559-55266659 1.35e-05
+
-
chr18:62270480-62270580 3.90e-05
+
-
chr14:35436548-35436648 1.01e-04
+
-
chr6:88202082-88202182 1.38e-04
+
-
chr14:77256350-77256450 5.25e-05
+
-
chr2:33709073-33709173 5.25e-05
+
-
chr16:98019483-98019583 6.45e-05
+
-
chr11:11611663-11611763 1.73e-04
+
-
chr1:153024102-153024202 1.99e-04
+
-
chr11:72288850-72288950 3.90e-05
+
-
chr11:58977073-58977173 1.13e-04
+
-
chr14:41820884-41820984 6.45e-05
+
-
chr11:67481111-67481211 3.90e-05
+
-
chr5:3512585-3512685 1.73e-04
+
-
chr16:90964469-90964569 1.73e-04
+
-
chr7:73341370-73341470 5.25e-05
+
-
chr13:83483532-83483632 1.73e-04
+
-
chr5:115234472-115234572 2.55e-05
+
-
chr17:24745767-24745867 1.35e-05
+
-
chr4:138735755-138735855 1.35e-05
+
-
chr7:87180520-87180620 1.99e-04
+
-
chr9:95451259-95451359 3.90e-05
+
-
chr17:26098344-26098444 3.90e-05
+
-
chr5:136620406-136620506 1.99e-04
+
-
chr15:89115873-89115973 3.90e-05
+
-
chr3:153354476-153354576 2.55e-05
+
-
chr11:104154532-104154632 2.73e-04
+
-
chr11:64614757-64614857 1.01e-04
+
-
chr2:36054026-36054126 1.35e-05
+
-
chr11:11909979-11910079 1.35e-05
+
-
chr2:156708077-156708177 2.55e-05
+
-
chr2:92284511-92284611 3.90e-05
+
-
chr10:60875932-60876032 1.99e-04
+
-
chr9:48531700-48531800 7.65e-05
+
-
chr7:20149164-20149264 3.90e-05
+
-
chr5:30220276-30220376 3.90e-05
+
-
chr18:61856587-61856687 3.90e-05
+
-
chr10:17309926-17310026 1.99e-04
+
-
chr11:87181608-87181708 2.23e-04
+
-
chr14:79695936-79696036 1.73e-04
+
-
chr15:77761992-77762092 2.59e-04
+
-
chr18:74888819-74888919 2.59e-04
+
-
chr19:53965082-53965182 3.90e-05
+
-
chr3:108554629-108554729 3.90e-05
+
-
chr4:134307760-134307860 1.35e-05
+
-
chr2:35686985-35687085 2.55e-05
+
-
chr8:119802083-119802183 5.25e-05
+
-
chr11:95696359-95696459 5.25e-05
+
-
chr17:47672673-47672773 1.99e-04
+
-
chr8:126502851-126502951 7.65e-05
+
-
chr10:80569130-80569230 7.65e-05
+
-
chr8:74792104-74792204 1.35e-05
+
-
chr11:57464953-57465053 2.55e-05
+
-
chr9:21728457-21728557 1.35e-05
+
-
chr7:91871204-91871304 5.25e-05
+
-
chr16:92709037-92709137 1.13e-04
+
-
chr8:74035521-74035621 2.73e-04
+
-
chr14:32074025-32074125 1.73e-04
+
-
chr13:36209360-36209460 1.99e-04
+
-
chr6:28374174-28374274 1.35e-05
+
-
chr2:131049288-131049388 7.65e-05
+
-
chr18:60661906-60662006 1.01e-04
+
-
chr18:34679003-34679103 7.65e-05
+
-
chr4:106286046-106286146 6.45e-05
+
-
chr2:153280813-153280913 2.73e-04
+
-
chr6:118783022-118783122 1.99e-04
+
-
chr18:61665353-61665453 1.35e-05
+
-
chr2:27997074-27997174 1.73e-04
+
-
chr6:84277910-84278010 1.73e-04
+
-
chr3:84575837-84575937 3.90e-05
+
-
chr19:24609128-24609228 3.90e-05
+
-
chr17:48411499-48411599 2.55e-05
+
-
chr4:62177544-62177644 2.73e-04
+
-
chr6:7647936-7648036 2.23e-04
+
-
chr16:31426693-31426793 2.59e-04
+
-
chr1:195490685-195490785 2.95e-04
+
-
chr18:78104155-78104255 2.83e-04
+
-
chr15:80877857-80877957 1.73e-04
+
-
chr15:5608737-5608837 3.90e-05
+
-
chr4:118863109-118863209 1.01e-04
+
-
chr14:118950913-118951013 1.73e-04
+
-
chr15:6655348-6655448 1.73e-04
+
-
chr7:148091398-148091498 1.99e-04
+
-
chr1:158675176-158675276 1.73e-04
+
-
chr11:44283011-44283111 1.01e-04
+
-
chr2:30627488-30627588 6.45e-05
+
-
chr11:78883299-78883399 3.90e-05
+
-
chr1:134270749-134270849 1.73e-04
+
-
chr5:144865906-144866006 6.45e-05
+
-
chr3:94469792-94469892 1.73e-04
+
-
chr14:21893741-21893841 1.35e-05
+
-
chr9:64381226-64381326 1.73e-04
+
-
chr18:64702734-64702834 1.73e-04
+
-
chr14:56204398-56204498 1.35e-05
+
-
chr6:88709720-88709820 6.45e-05
+
-
chr19:10736323-10736423 1.35e-05
+
-
chr7:71041678-71041778 7.65e-05
+
-
chr11:86556026-86556126 1.73e-04
+
-
chr9:22257848-22257948 1.73e-04
+
-
chr15:66649814-66649914 5.25e-05
+
-
chr16:91804537-91804637 2.59e-04
+
-
chr11:109418579-109418679 7.65e-05
+
-
chr2:120272043-120272143 5.25e-05
+
-
chr19:6300495-6300595 1.13e-04
+
-
chr10:84038676-84038776 6.45e-05
+
-
chr12:113861904-113862004 2.35e-04
+
-
chr10:61699880-61699980 1.73e-04
+
-
chr13:73612780-73612880 3.90e-05
+
-
chr6:120124421-120124521 3.90e-05
+
-
chr7:129161663-129161763 6.45e-05
+
-
chr1:128547288-128547388 1.35e-05
+
-
chr2:130461363-130461463 5.25e-05
+
-
chr2:153351445-153351545 7.65e-05
+
-
chr1:82812370-82812470 1.73e-04
+
-
chr9:59136456-59136556 2.55e-05
+
-
chr4:46054738-46054838 2.59e-04
+
-
chr8:122893817-122893917 2.73e-04
+
-
chr4:101327339-101327439 2.73e-04
+
-
chr1:174438255-174438355 2.55e-05
+
-
chr16:45025349-45025449 1.35e-05
+
-
chr18:62336137-62336237 1.99e-04
+
-
chr8:87424941-87425041 2.59e-04
+
-
chr2:153308822-153308922 2.23e-04
+
-
chr15:34615448-34615548 1.38e-04
+
-
chr2:91474916-91475016 6.45e-05
+
-
chr1:75446881-75446981 5.25e-05
+
-
chr14:56011135-56011235 6.45e-05
+
-
chr9:78354152-78354252 6.45e-05
+
-
chr7:134280807-134280907 2.83e-04
+
-
chr1:43577752-43577852 5.25e-05
+
-
chr7:16987257-16987357 2.59e-04
+
-
chr15:100504223-100504323 5.25e-05
+
-
chr5:124716796-124716896 3.90e-05
+
-
chr5:135389547-135389647 2.73e-04
+
-
chr18:57996495-57996595 1.35e-05
+
-
chr10:76622272-76622372 2.55e-05
+
-
chr13:45944944-45945044 1.73e-04
+
-
chr19:6284336-6284436 3.90e-05
+
-
chr8:86180315-86180415 1.35e-05
+
-
chr13:44597102-44597202 2.83e-04
+
-
chr5:132289976-132290076 7.65e-05
+
-
chr11:4192174-4192274 6.45e-05
+
-
chr1:122155712-122155812 2.83e-04
+
-
chr19:32550414-32550514 6.45e-05
+
-
chr1:170237894-170237994 1.73e-04
+
-
chr7:148580006-148580106 1.99e-04
+
-
 
0
20
40
60
80
100

Time 934.8 secs.

Motif 3

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Summary

Sequence Logo

E-value 8.5e-005
Width 8
Sites 60
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[CA]ACAG[CA]TG

Further Analysis

Submit this motif to  
      
      
      
      
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Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
chr7:148580006-148580106 - 87 1.69e-05 TTATGA CACAGCTG CAGAGATAAC
chr1:75446881-75446981 - 39 1.69e-05 TCAGCACCCG CACAGCTG TCAGCCCCTG
chr6:32952065-32952165 - 20 1.69e-05 GGATACAGTA CACAGCTG CTACACTGAC
chr8:122893817-122893917 + 15 1.69e-05 GCCCTTTGCC CACAGCTG AGTCTCCAGG
chr10:75159670-75159770 - 76 1.69e-05 GTGGAGGGGA CACAGCTG AACACCAGAC
chr4:155559650-155559750 + 28 1.69e-05 ACTTTGCTAT CACAGCTG CCATCTGCTG
chr2:24362915-24363015 - 75 1.69e-05 ATGCACAGAG CACAGCTG TCCCTGGAGC
chr16:17249194-17249294 - 13 1.69e-05 AGGTGTATGT CACAGCTG AGTCACTAGG
chr1:128214293-128214393 - 11 1.69e-05 AGCCTTTCTG CACAGCTG CAAACTGGAT
chr2:153280813-153280913 + 61 1.69e-05 TCGTGGGCTA CACAGCTG GGGGCTTGAT
chr9:75406448-75406548 + 16 1.69e-05 TCCTGTGCAG CACAGCTG GGGCCAGCTG
chr6:88708749-88708849 - 89 1.69e-05 CCCC CACAGCTG CCAGCTCCAG
chr18:74888819-74888919 + 41 1.69e-05 GCTATCAGCA CACAGCTG GTCCCTGTCT
chr10:60875932-60876032 - 43 1.69e-05 TGAGGCCCCG CACAGCTG CCACAGGGAG
chr8:13108241-13108341 - 20 1.69e-05 CAGCAGCTGC CACAGCTG GGGAACGGGA
chr19:5510248-5510348 - 27 1.69e-05 TCCCATTGCC CACAGCTG CTCCTTCTGA
chr5:149777372-149777472 - 32 1.69e-05 TAACTCTCTC CACAGCTG TTCCCTTACA
chr7:111009333-111009433 - 70 1.69e-05 ACTGATCAGT CACAGCTG AAAACATCTG
chr6:128795288-128795388 + 33 1.69e-05 GCAGCGGAAG CACAGCTG CTGGCTGCCT
chr19:3333958-3334058 - 65 3.19e-05 CCCTGCAGCC CACAGATG GGGAGCCAGA
chr5:135389547-135389647 + 47 3.19e-05 ACTAGGGTAG CACAGATG CCAGCCCTCA
chr9:123610905-123611005 + 22 3.19e-05 AGTAGAGAGG CACAGATG TGACTAGATA
chr15:34615448-34615548 + 70 3.19e-05 GGGCTTCAGA CACAGATG GAGGATACAA
chr4:101327339-101327439 - 31 3.19e-05 GGGGTGATGC CACAGATG TAGGAACTCA
chr18:64702734-64702834 + 82 3.19e-05 TGTCCCACCA CACAGATG CCACTGCTCT
chr9:57491450-57491550 - 48 3.19e-05 CACCACACCA CACAGATG GCCCACACGA
chr11:100583413-100583513 + 93 3.19e-05 CGGCCAGCCC CACAGATG
chr6:56854908-56855008 + 59 3.19e-05 CCTGCAGTGG CACAGATG TGTGTACATG
chr8:125236266-125236366 - 23 3.19e-05 AACTGAGGAG CACAGATG TGCTATGGAT
chr11:53926520-53926620 + 16 3.19e-05 AGGAAGCCCG CACAGATG CAGACAATAG
chr5:117585839-117585939 - 40 3.19e-05 AATCAACAGG CACAGATG GATGGGATGG
chr15:58890642-58890742 - 14 3.19e-05 AGCACTGACA CACAGATG GGTAGGTTCT
chr8:97491406-97491506 + 76 4.70e-05 GGGGCCACAC AACAGCTG AGGGCACAGG
chr13:44597102-44597202 - 20 4.70e-05 TGTGCCAGGC AACAGCTG CTTGGTATCA
chr13:45944944-45945044 - 85 4.70e-05 AAAGTCCT AACAGCTG AAGGAGATAA
chr6:55213515-55213615 - 77 4.70e-05 CACAGCCTTG AACAGCTG CCAGAACCCC
chr2:130461363-130461463 + 34 4.70e-05 CAGGACAAGA AACAGCTG CAGGAGGAGG
chr16:91804537-91804637 - 14 4.70e-05 GTTATCAAGC AACAGCTG TCTACCTCAT
chr15:66649814-66649914 - 39 4.70e-05 GGAATCTAGA AACAGCTG GCTGCCTGGC
chr7:19734105-19734205 + 31 4.70e-05 TATCGTCTGG AACAGCTG GCACCCTGGG
chr14:55045305-55045405 + 22 4.70e-05 AGGACTTGGA AACAGCTG CGAAGGATTC
chr14:32959223-32959323 + 12 4.70e-05 GATGATAGTA AACAGCTG TCCAGATAAC
chr15:77761992-77762092 + 46 4.70e-05 CATTATCAGC AACAGCTG CAGCGGGGGA
chr14:79886344-79886444 - 35 4.70e-05 GGAGCACTTT AACAGCTG TAGCACATTC
chr15:61816295-61816395 - 73 4.70e-05 CCGCAGGTGG AACAGCTG CCTCGCTCCA
chr7:134280807-134280907 - 46 6.05e-05 ACAACAGGGG AACAGATG GCGCCAGTGA
chr6:131337084-131337184 + 80 6.05e-05 CAGGAAAGTT AACAGATG GTGTAGGATG
chr2:91474916-91475016 - 19 6.05e-05 AAGGCAGGGT AACAGATG GGATGGGGGC
chr13:108409429-108409529 + 6 6.05e-05 GGGTA AACAGATG AGCAGGGACA
chr10:93535568-93535668 - 30 6.05e-05 GCTTCAAGTA AACAGATG GGCTACAGTG
chr3:84457995-84458095 + 23 6.05e-05 TCTTTCAGAG AACAGATG CCTGCCCTGC
chr5:77548404-77548504 - 45 7.93e-05 TGTGGCTGCC CACAGCCG CACATTGCAG
chr1:183074071-183074171 - 79 7.93e-05 GAAAGACTGC CACAGCCG CGCTCGCCGC
chr1:93146718-93146818 - 7 7.93e-05 CGCTGGCCTT CACAGCCG CACCGG
chr9:124052647-124052747 - 86 7.93e-05 TCCTCGC CACAGCCG TGCTTCCTGC
chr10:80597961-80598061 + 40 7.93e-05 ACGCCCCTGG CACAGCCG GGTGGAGGCG
chr2:11698914-11699014 - 42 9.62e-05 AGACAGCGAG CACAGACG ACTGCAGACT
chr6:88148365-88148465 - 92 9.62e-05 G CACAGACG TGAAGCGGGG
chr13:73612780-73612880 - 45 9.62e-05 ACTGCAGTGT CACAGACG ACCCGAGTTC
chr15:38230168-38230268 - 56 9.62e-05 CTTAGTTAGC CACAGACG GGAGCACTGA

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
chr3:84457995-84458095 6.05e-05
+
-
chr15:58890642-58890742 3.19e-05
+
-
chr15:61816295-61816395 4.70e-05
+
-
chr6:128795288-128795388 1.69e-05
+
-
chr7:111009333-111009433 1.69e-05
+
-
chr10:80597961-80598061 7.93e-05
+
-
chr5:117585839-117585939 3.19e-05
+
-
chr5:149777372-149777472 1.69e-05
+
-
chr19:5510248-5510348 1.69e-05
+
-
chr14:79886344-79886444 4.70e-05
+
-
chr10:93535568-93535668 6.05e-05
+
-
chr8:13108241-13108341 1.69e-05
+
-
chr11:53926520-53926620 3.19e-05
+
-
chr10:60875932-60876032 1.69e-05
+
-
chr15:77761992-77762092 4.70e-05
+
-
chr8:125236266-125236366 3.19e-05
+
-
chr18:74888819-74888919 1.69e-05
+
-
chr13:108409429-108409529 6.05e-05
+
-
chr6:88708749-88708849 1.69e-05
+
-
chr6:56854908-56855008 3.19e-05
+
-
chr14:32959223-32959323 4.70e-05
+
-
chr14:55045305-55045405 4.70e-05
+
-
chr9:124052647-124052747 7.93e-05
+
-
chr1:93146718-93146818 7.93e-05
+
-
chr9:75406448-75406548 1.69e-05
+
-
chr2:153280813-153280913 1.69e-05
+
-
chr11:100583413-100583513 3.19e-05
+
-
chr7:19734105-19734205 4.70e-05
+
-
chr1:128214293-128214393 1.69e-05
+
-
chr1:183074071-183074171 7.93e-05
+
-
chr15:38230168-38230268 9.62e-05
+
-
chr16:17249194-17249294 1.69e-05
+
-
chr9:57491450-57491550 3.19e-05
+
-
chr2:24362915-24363015 1.69e-05
+
-
chr4:155559650-155559750 1.69e-05
+
-
chr18:64702734-64702834 3.19e-05
+
-
chr15:66649814-66649914 4.70e-05
+
-
chr16:91804537-91804637 4.70e-05
+
-
chr10:75159670-75159770 1.69e-05
+
-
chr13:73612780-73612880 9.62e-05
+
-
chr5:77548404-77548504 7.93e-05
+
-
chr2:130461363-130461463 4.70e-05
+
-
chr8:122893817-122893917 1.69e-05
+
-
chr4:101327339-101327439 3.19e-05
+
-
chr6:32952065-32952165 1.69e-05
+
-
chr15:34615448-34615548 3.19e-05
+
-
chr2:91474916-91475016 6.05e-05
+
-
chr9:123610905-123611005 3.19e-05
+
-
chr1:75446881-75446981 1.69e-05
+
-
chr6:131337084-131337184 6.05e-05
+
-
chr6:88148365-88148465 9.62e-05
+
-
chr7:134280807-134280907 6.05e-05
+
-
chr6:55213515-55213615 4.70e-05
+
-
chr5:135389547-135389647 3.19e-05
+
-
chr13:45944944-45945044 4.70e-05
+
-
chr2:11698914-11699014 9.62e-05
+
-
chr13:44597102-44597202 4.70e-05
+
-
chr8:97491406-97491506 4.70e-05
+
-
chr7:148580006-148580106 1.69e-05
+
-
chr19:3333958-3334058 3.19e-05
+
-
 
0
20
40
60
80
100

Time 1350.9 secs.

All Motifs

Top

Combined Block Diagrams

Non-overlapping sites with a p-value better than 0.0001.
The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. The motif blocks have tool tips with more information.

Motif 1
Motif 2
Motif 3
Name Combined p-value Motif Location
chr19:4558484-4558584 1.72e-03
+
-
chr6:90699987-90700087 4.25e-03
+
-
chr16:14307470-14307570 4.59e-04
+
-
chr6:87133950-87134050 2.32e-04
+
-
chr3:84457995-84458095 6.23e-04
+
-
chr16:17764080-17764180 1.58e-03
+
-
chr2:91790034-91790134 3.38e-03
+
-
chr13:60844588-60844688 2.49e-06
+
-
chr4:100919100-100919200 1.36e-01
+
-
chr11:104890232-104890332 1.49e-02
+
-
chr7:142785515-142785615 3.63e-04
+
-
chr15:58890642-58890742 9.19e-04
+
-
chrX:146984108-146984208 1.02e-01
+
-
chr19:45150874-45150974 2.60e-04
+
-
chr11:68902694-68902794 1.99e-03
+
-
chr7:26023121-26023221 1.77e-03
+
-
chr18:55266559-55266659 2.14e-05
+
-
chr18:62270480-62270580 1.10e-02
+
-
chr7:148744188-148744288 5.19e-04
+
-
chr12:17512797-17512897 2.46e-02
+
-
chr19:5928059-5928159 1.19e-02
+
-
chr15:61816295-61816395 1.38e-01
+
-
chr6:128795288-128795388 1.12e-02
+
-
chr6:88202082-88202182 1.56e-03
+
-
chr19:6132339-6132439 8.56e-05
+
-
chr14:77256350-77256450 6.77e-02
+
-
chr7:130602746-130602846 5.42e-04
+
-
chr2:33709073-33709173 3.93e-02
+
-
chr2:72125137-72125237 1.89e-02
+
-
chr16:98019483-98019583 8.54e-02
+
-
chr7:111009333-111009433 2.11e-02
+
-
chr11:11611663-11611763 1.43e-03
+
-
chr5:23145038-23145138 3.08e-03
+
-
chr13:6641667-6641767 7.15e-04
+
-
chr10:80597961-80598061 5.17e-03
+
-
chr18:65149099-65149199 5.54e-02
+
-
chr5:117585839-117585939 2.25e-02
+
-
chr7:133500481-133500581 5.17e-05
+
-
chr11:72288850-72288950 2.15e-02
+
-
chr16:97228058-97228158 1.50e-05
+
-
chr14:41820884-41820984 8.87e-03
+
-
chr5:149777372-149777472 1.21e-02
+
-
chr11:67481111-67481211 9.70e-03
+
-
chr7:73341370-73341470 2.49e-02
+
-
chr9:107209677-107209777 3.35e-05
+
-
chr4:40797723-40797823 7.35e-05
+
-
chr13:90028659-90028759 1.58e-02
+
-
chr13:83483532-83483632 4.04e-04
+
-
chr8:119469349-119469449 2.44e-04
+
-
chr5:115234472-115234572 4.21e-02
+
-
chrX:12647608-12647708 7.77e-03
+
-
chr19:5510248-5510348 1.43e-02
+
-
chr17:24745767-24745867 4.32e-03
+
-
chr4:138735755-138735855 1.56e-02
+
-
chr4:118700929-118701029 1.06e-02
+
-
chr9:95451259-95451359 6.17e-02
+
-
chr17:26098344-26098444 1.82e-02
+
-
chr7:146890931-146891031 6.95e-06
+
-
chr15:79652657-79652757 5.83e-04
+
-
chr4:41412087-41412187 1.15e-03
+
-
chr15:89115873-89115973 2.36e-04
+
-
chr1:176102605-176102705 1.01e-03
+
-
chr19:41556572-41556672 2.21e-02
+
-
chr3:153354476-153354576 3.38e-03
+
-
chr9:20693911-20694011 1.60e-02
+
-
chr11:77981917-77982017 1.35e-03
+
-
chr2:36054026-36054126 2.13e-03
+
-
chr11:87563537-87563637 5.64e-08
+
-
chr11:11909979-11910079 2.74e-03
+
-
chr16:21791784-21791884 1.41e-05
+
-
chr2:156708077-156708177 5.63e-02
+
-
chr14:79886344-79886444 1.05e-02
+
-
chr10:93535568-93535668 7.67e-02
+
-
chr6:88066198-88066298 1.20e-02
+
-
chr7:111058441-111058541 4.92e-04
+
-
chr8:13108241-13108341 6.15e-04
+
-
chr2:92284511-92284611 5.91e-02
+
-
chr11:53926520-53926620 1.54e-02
+
-
chr11:50191029-50191129 6.83e-04
+
-
chr10:60875932-60876032 4.41e-03
+
-
chr7:75118469-75118569 3.62e-04
+
-
chr9:48531700-48531800 2.96e-02
+
-
chr7:20149164-20149264 2.76e-05
+
-
chr5:30220276-30220376 2.27e-02
+
-
chr3:83843957-83844057 1.63e-03
+
-
chr11:106243796-106243896 3.82e-04
+
-
chr18:61856587-61856687 4.74e-02
+
-
chr11:87181608-87181708 5.63e-03
+
-
chr15:73578438-73578538 1.22e-03
+
-
chr14:79695936-79696036 4.85e-03
+
-
chr2:38386455-38386555 4.36e-05
+
-
chr15:77761992-77762092 1.51e-02
+
-
chr16:13730912-13731012 6.70e-03
+
-
chr5:124460758-124460858 8.22e-04
+
-
chr8:125236266-125236366 7.35e-03
+
-
chr18:74888819-74888919 4.30e-04
+
-
chr13:108409429-108409529 4.07e-02
+
-
chr19:53965082-53965182 1.07e-02
+
-
chr3:108554629-108554729 1.61e-02
+
-
chr1:174234509-174234609 2.92e-04
+
-
chr6:88708749-88708849 1.65e-02
+
-
chr4:134307760-134307860 8.95e-03
+
-
chr1:39453122-39453222 8.38e-04
+
-
chr2:35686985-35687085 7.84e-03
+
-
chr15:25538460-25538560 5.05e-03
+
-
chr6:56854908-56855008 5.42e-03
+
-
chr8:119802083-119802183 2.20e-02
+
-
chr14:32959223-32959323 8.80e-06
+
-
chr14:55045305-55045405 1.15e-01
+
-
chr11:95696359-95696459 3.00e-02
+
-
chr17:47672673-47672773 1.10e-02
+
-
chr13:43310303-43310403 2.99e-02
+
-
chr8:126502851-126502951 1.23e-01
+
-
chr4:21702997-21703097 7.66e-02
+
-
chr10:80569130-80569230 1.04e-01
+
-
chr8:74792104-74792204 4.28e-04
+
-
chr11:57464953-57465053 1.23e-04
+
-
chr9:21728457-21728557 5.66e-03
+
-
chr7:91871204-91871304 2.08e-02
+
-
chr16:96082792-96082892 2.38e-06
+
-
chr9:124052647-124052747 4.34e-04
+
-
chr19:46802326-46802426 6.43e-05
+
-
chr5:148469390-148469490 5.81e-05
+
-
chr9:113878018-113878118 2.36e-04
+
-
chr12:8929800-8929900 1.05e-02
+
-
chr1:93146718-93146818 1.61e-01
+
-
chr7:148771207-148771307 2.99e-02
+
-
chr19:10277565-10277665 1.41e-02
+
-
chr2:131322847-131322947 2.50e-02
+
-
chr9:75406448-75406548 6.82e-03
+
-
chr10:11043269-11043369 1.70e-03
+
-
chr4:149065061-149065161 7.32e-05
+
-
chr6:28374174-28374274 2.31e-02
+
-
chr1:135704520-135704620 7.78e-04
+
-
chr2:131049288-131049388 4.08e-02
+
-
chr18:34679003-34679103 1.57e-01
+
-
chr4:106286046-106286146 3.51e-02
+
-
chr7:148331608-148331708 3.56e-03
+
-
chr2:153280813-153280913 2.78e-03
+
-
chr12:113882364-113882464 9.46e-03
+
-
chr19:38128496-38128596 1.73e-05
+
-
chr11:4060161-4060261 5.00e-02
+
-
chr2:45027350-45027450 1.24e-05
+
-
chr18:61665353-61665453 4.73e-04
+
-
chr2:145924694-145924794 6.49e-03
+
-
chr2:116821982-116822082 7.94e-04
+
-
chr5:35261353-35261453 2.71e-05
+
-
chr5:144654206-144654306 1.84e-03
+
-
chr1:162965054-162965154 3.55e-03
+
-
chr3:84575837-84575937 1.11e-04
+
-
chr10:41984714-41984814 3.70e-02
+
-
chr11:100583413-100583513 3.47e-03
+
-
chr19:24609128-24609228 2.17e-02
+
-
chr4:33329930-33330030 3.30e-06
+
-
chr17:48411499-48411599 4.35e-02
+
-
chr17:84050520-84050620 1.27e-02
+
-
chr9:63606657-63606757 9.71e-04
+
-
chr1:167034916-167035016 4.57e-05
+
-
chr2:35359405-35359505 5.76e-03
+
-
chr7:19734105-19734205 1.22e-01
+
-
chr7:130605664-130605764 2.59e-05
+
-
chr1:183179609-183179709 6.93e-04
+
-
chr1:128214293-128214393 1.67e-02
+
-
chr6:50840691-50840791 8.70e-04
+
-
chr15:5608737-5608837 1.73e-04
+
-
chr1:183074071-183074171 1.92e-01
+
-
chr9:65917469-65917569 2.89e-03
+
-
chr15:38230168-38230268 2.01e-01
+
-
chr16:17249194-17249294 2.80e-03
+
-
chr11:94858849-94858949 2.48e-03
+
-
chr9:57491450-57491550 5.76e-02
+
-
chr5:31099800-31099900 2.48e-06
+
-
chr1:193915603-193915703 9.61e-05
+
-
chr13:102530165-102530265 8.80e-02
+
-
chr19:8679672-8679772 1.09e-02
+
-
chr2:24362915-24363015 4.51e-02
+
-
chr12:56331049-56331149 2.58e-02
+
-
chr9:67722597-67722697 6.59e-06
+
-
chr15:6655348-6655448 1.06e-03
+
-
chr11:82659553-82659653 2.08e-05
+
-
chr1:158675176-158675276 6.11e-03
+
-
chr11:44283011-44283111 1.22e-04
+
-
chr2:30627488-30627588 9.03e-02
+
-
chr11:78883299-78883399 8.32e-02
+
-
chr11:106631827-106631927 2.08e-02
+
-
chr5:144865906-144866006 6.26e-03
+
-
chr3:100242317-100242417 1.55e-04
+
-
chr13:100524118-100524218 5.14e-03
+
-
chr14:21893741-21893841 4.06e-04
+
-
chr4:155559650-155559750 2.62e-02
+
-
chr9:64381226-64381326 5.57e-03
+
-
chr9:21119120-21119220 4.39e-04
+
-
chr4:132300137-132300237 2.94e-03
+
-
chr18:80452623-80452723 2.34e-03
+
-
chr18:64702734-64702834 2.81e-03
+
-
chr14:56204398-56204498 3.70e-02
+
-
chr6:88709720-88709820 1.02e-02
+
-
chr19:10736323-10736423 5.71e-03
+
-
chr7:71041678-71041778 1.74e-02
+
-
chr7:26474633-26474733 3.69e-04
+
-
chr15:66649814-66649914 1.49e-03
+
-
chr15:89328047-89328147 2.81e-05
+
-
chr16:91804537-91804637 1.66e-05
+
-
chr10:75159670-75159770 8.97e-06
+
-
chr13:55646080-55646180 7.82e-06
+
-
chr11:109418579-109418679 4.72e-02
+
-
chr5:21206824-21206924 7.87e-03
+
-
chr2:120272043-120272143 1.03e-01
+
-
chr6:146167847-146167947 6.58e-04
+
-
chr17:27995986-27996086 6.78e-03
+
-
chr10:84038676-84038776 4.53e-02
+
-
chr17:15221049-15221149 3.04e-08
+
-
chr12:102194204-102194304 1.64e-04
+
-
chr10:53316078-53316178 1.17e-06
+
-
chr1:23928421-23928521 2.81e-04
+
-
chr13:73612780-73612880 4.80e-03
+
-
chr10:76993954-76994054 1.66e-03
+
-
chr6:120124421-120124521 5.59e-02
+
-
chr5:77548404-77548504 1.21e-03
+
-
chr13:54781799-54781899 9.52e-04
+
-
chr7:129161663-129161763 6.89e-02
+
-
chr1:128547288-128547388 2.94e-04
+
-
chr4:128386530-128386630 4.20e-04
+
-
chr2:130461363-130461463 3.54e-03
+
-
chr2:153351445-153351545 9.06e-02
+
-
chr7:135998135-135998235 3.22e-06
+
-
chr9:59136456-59136556 6.63e-04
+
-
chr10:75950921-75951021 1.07e-02
+
-
chr8:8489044-8489144 1.28e-03
+
-
chr11:118261802-118261902 3.34e-03
+
-
chr5:75856386-75856486 6.59e-03
+
-
chr6:122712931-122713031 1.47e-06
+
-
chr10:76621716-76621816 4.83e-02
+
-
chr2:76210235-76210335 2.00e-03
+
-
chr9:45596473-45596573 1.38e-02
+
-
chr10:82542959-82543059 6.39e-06
+
-
chr3:94746440-94746540 1.36e-06
+
-
chr8:122893817-122893917 2.40e-03
+
-
chr4:101327339-101327439 8.50e-04
+
-
chr1:174438255-174438355 5.13e-03
+
-
chr16:45025349-45025449 3.25e-02
+
-
chr6:32952065-32952165 1.36e-02
+
-
chr15:34615448-34615548 5.89e-03
+
-
chr2:91474916-91475016 2.46e-03
+
-
chr10:79807688-79807788 1.58e-02
+
-
chr9:123610905-123611005 1.48e-03
+
-
chr8:119609333-119609433 6.85e-03
+
-
chr1:75446881-75446981 9.79e-04
+
-
chr6:131337084-131337184 1.48e-02
+
-
chr15:57630931-57631031 1.13e-02
+
-
chr7:4477731-4477831 1.21e-03
+
-
chr6:11677311-11677411 1.96e-05
+
-
chr14:56011135-56011235 1.19e-03
+
-
chr11:48901754-48901854 1.62e-03
+
-
chr16:58661929-58662029 1.89e-03
+
-
chr18:15503914-15504014 2.64e-03
+
-
chr6:127527680-127527780 5.09e-05
+
-
chr9:78354152-78354252 9.31e-04
+
-
chr6:88148365-88148465 1.86e-01
+
-
chr7:134280807-134280907 1.73e-02
+
-
chr10:126642344-126642444 7.65e-05
+
-
chr6:100620323-100620423 2.01e-03
+
-
chr1:43577752-43577852 6.83e-02
+
-
chr4:134842853-134842953 1.92e-06
+
-
chr15:100504223-100504323 1.54e-02
+
-
chr11:95574671-95574771 4.25e-04
+
-
chr6:55213515-55213615 3.53e-02
+
-
chr11:85152848-85152948 7.83e-04
+
-
chr16:97128212-97128312 1.57e-03
+
-
chr5:124716796-124716896 1.64e-03
+
-
chr5:135389547-135389647 5.24e-03
+
-
chr3:153515155-153515255 7.69e-04
+
-
chr18:57996495-57996595 1.57e-02
+
-
chr10:76622272-76622372 6.40e-02
+
-
chr2:153409358-153409458 2.45e-03
+
-
chr13:45944944-45945044 3.51e-05
+
-
chr2:11698914-11699014 1.76e-01
+
-
chr7:139685870-139685970 3.60e-04
+
-
chr19:6284336-6284436 2.75e-04
+
-
chr8:86180315-86180415 3.53e-02
+
-
chr7:19911114-19911214 4.45e-03
+
-
chr13:44597102-44597202 5.83e-03
+
-
chr5:132289976-132290076 2.35e-02
+
-
chr11:4192174-4192274 1.99e-04
+
-
chr13:43325034-43325134 2.08e-04
+
-
chr2:172455768-172455868 7.01e-05
+
-
chr1:122155712-122155812 5.43e-04
+
-
chr2:172085424-172085524 1.11e-04
+
-
chr4:97496869-97496969 3.44e-04
+
-
chr14:32020205-32020305 9.43e-04
+
-
chr19:32550414-32550514 5.12e-04
+
-
chr1:193679251-193679351 1.91e-04
+
-
chr8:97491406-97491506 1.00e-01
+
-
chr7:148580006-148580106 3.37e-03
+
-
chr2:4491293-4491393 1.40e-03
+
-
chr19:3333958-3334058 1.73e-03
+
-
chr7:54263929-54264029 8.82e-04
+
-
 
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Motif 1
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Top
MEME version
4.9.0 (Release date: Wed Oct 3 11:07:26 EST 2012)
Reference
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
show training set...
Command line summary

Letter frequencies in dataset
A: 0.219   C: 0.281   G: 0.281   T: 0.219

Background letter frequencies (from ./background):
A: 0.236   C: 0.264   G: 0.264   T: 0.236

Stopping Reason
Stopped because nmotifs = 3 reached. Program ran on sten-0-5.local.
show model parameters...

Explanation of MEME Results

Top

The MEME results consist of

  • The overview of all discovered motifs.
  • Information on each of the motifs MEME discovered, including:
    1. A summary table showing the width, number of contributing sites, log likelihood ratio, statistical significance, information content and relative entropy of the motif.
    2. A sequence LOGO.
    3. Downloadable LOGO files suitable for publication.
    4. A regular expression describing the motif.
    5. Some further analysis that can be performed on the motif.
    6. A list of data formats describing the motif.
    7. The contributing sites of the motif sorted by p-value and aligned with each other.
    8. The block diagrams of the contributing sites of the motif within each sequence in the training set.
  • A combined block diagram showing an optimized (non-overlapping) tiling of all of the motifs onto each of the sequences in the training set.
  • The version of MEME and the date it was released.
  • The reference to cite if you use MEME in your research.
  • A description of the sequences you submitted (the "training set") showing the name, "weight" and length of each sequence.
  • The command line summary detailing the parameters with which you ran MEME.
  • The reason why MEME stopped and the name of the CPU on which it ran.
  • This explanation of how to interpret MEME results.

Motifs

For each motif that it discovers in the training set, MEME prints the following information:

Summary Table

This summary table gives the main attributes of the motif.

E-value
The statistical significance of the motif. MEME usually finds the most statistically significant (low E-value) motifs first. The E-value of a motif is based on its log likelihood ratio, width, sites, the background letter frequencies (given in the command line summary), and the size of the training set. The E-value is an estimate of the expected number of motifs with the given log likelihood ratio (or higher), and with the same width and site count, that one would find in a similarly sized set of random sequences. (In random sequences each position is independent with letters chosen according to the background letter frequencies.)
Width
The width of the motif. Each motif describes a pattern of a fixed with as no gaps are allowed in MEME motifs.
Sites
The number of sites contributing to the construction of the motif.
Log Likelihood Ratio
The log likelihood ratio of the motif.The log likelihood ratio is the logarithm of the ratio of the probability of the occurrences of the motif given the motif model (likelihood given the motif) versus their probability given the background model (likelihood given the null model). (Normally the background model is a 0-order Markov model using the background letter frequencies, but higher order Markov models may be specified via the -bfile option to MEME.)
Information Content
The information content of the motif in bits. It is equal to the sum of the uncorrected information content, R(), in the columns of the LOGO. This is equal relative entropy of the motif relative to a uniform background frequency model.
Relative Entropy
The relative entropy of the motif, computed in bits and relative to the background letter frequencies given in the command line summary. It is equal to the log-likelihood ratio (llr) divided by the number of contributing sites of the motif times 1/ln(2),

re = llr / (sites * ln(2)).
Sequence LOGO

MEME motifs are represented by position-specific probability matrices that specify the probability of each possible letter appearing at each possible position in an occurrence of the motif. These are displayed as "sequence LOGOS", containing stacks of letters at each position in the motif. The total height of the stack is the "information content" of that position in the motif in bits. The height of the individual letters in a stack is the probability of the letter at that position multiplied by the total information content of the stack.

Note: The MEME LOGO differs from those produced by the Weblogo program because a small-sample correction is NOT applied. However, MEME LOGOs in PNG and encapsulated postscript (EPS) formats with small-sample correction (SSC) are available by clicking on the download button with "SSC" set to "on" under Download LOGO. The MEME LOGOs without small sample correction are similarly available. Error bars are included in the LOGOs with small-sample correction.

Modern web browsers supporting the canvas element and it's text manipulation functions as described in the html 5 standard, can render the sequence LOGOs without needing the images. The browsers which work with this feature are:

  • Firefox 3.5 and above
  • Safari 4 and above
  • Google Chrome 4 and above

Unfortunately Internet Explorer 8 does not support any html 5 features.

The information content of each motif position is computed as described in the paper by Schneider and Stephens, "Sequence Logos: A New Way to Display Consensus Sequences" but the small-sample correction, e(n), is set to zero for the LOGO displayed in the MEME output. The corrected information content of position i is given by

            R(i) for amino acids   = log2(20) - (H(i) + e(n))   (1a) 
            R(i) for nucleic acids =    2    - (H(i) + e(n))    (1b)
          

where H(i) is the entropy of position i,

            H(l) = - (Sum f(a,i) * log2[ f(a,i) ]).             (2)
          

Here, f(a,i) is the frequency of base or amino acid a at position i, and e(n) is the small-sample correction for an alignment of n letters. The height of letter a in column i is given by

            height = f(a,i) * R(i)                              (3)
          

The approximation for the small-sample correction, e(n), is given by:

            e(n) = (s-1) / (2 * ln(2) * n),                     (4)
          

where s is 4 for nucleotides, 20 for amino acids, and n is the number of sequences in the alignment.

The letters in the logos are colored as follows.
For DNA sequences, the letter categories contain one letter each.

NUCLEIC ACIDS COLOR
A RED
C BLUE
G ORANGE
T GREEN

For proteins, the categories are based on the biochemical properties of the various amino acids.

AMINO ACIDS COLOR PROPERTIES
A, C, F, I, L, V, W and M BLUE Most hydrophobic[Kyte and Doolittle, 1982]
NQST GREEN Polar, non-charged, non-aliphatic residues
DE MAGENTA Acidic
KR RED Positively charged
H PINK  
G ORANGE  
P YELLOW  
Y TURQUOISE  

J. Kyte and R. Doolittle, 1982. "A Simple Method for Displaying the Hydropathic Character of a Protein", J. Mol Biol. 157, 105-132.

Note: the "text" output format of MEME preserves the historical MEME format where LOGOS are replaced by a simplified probability matrix, a relative entropy plot, and a multi-level consensus sequence.

Download LOGO

Logos can be generated on the fly by the meme webservice and you may specify a number of options to customize them to your needs. The options are:

Orientation
Only valid for nucleotide motifs. Generate the standard view or the reverse complemented view of the motif.
SSC
Use small sample correction and show errorbars on the image. Small sample correction is used by the Weblogo program.
Format
The format of the generated image. If the image is to be used on the web then png is recommend. If the image is to be published then eps is recommended.
Width
The width of the generated image in centimetres.
Height
The height of the generated image in centimetres.

Regular Expression

This is a regular expression (RE) describing the motif. In each column, all letters with observed frequencies greater than 0.2 are shown; less-frequent letters are not included in the RE. MEME regular expressions are interpreted as follows: single letters match that letter; groups of letters in square brackets match any of the letters in the group. Regular expressions can be used for searching for the motif in sequences (using, for example, PatMatch) but the search accuracy will usually be better with the PSSM (using, for example MAST.)

Further Analysis

Either as a group or individually the motifs have a number of options for further analysis.

MAST
Finds the best matching positions for a set of motifs in each sequence provided to it, ranked by the combined score of each sequence. For more information about MAST please read the introduction.
FIMO
Finds all matches for a motif. For more information about FIMO please read the introduction.
TOMTOM
Compares a single motif to a database of motifs. For more information about TOMTOM please read the introduction.
GOMO
Identifies possible roles of DNA binding motifs. For more information about GOMO please read the introduction.
BLOCKS
Submit to Blocks Multiple Alignment Processor where you can do several things like create phylogeny trees and search the blocks against a database of other blocks (protein only). For more information about BLOCKS Multiple Alignment Processor please visit the website.
Data Formats

The extracted data is avaliable in the following formats.

PSPM Format
The motif itself is a position-specific probability matrix giving, for each position in the pattern, the observed frequency ("probability") of each possible letter. The probability matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The motif is preceded by a line starting with "letter-probability matrix:" and containing the length of the alphabet, width of the motif, number of occurrences of the motif, and the E-value of the motif.
Note: Earlier versions of MEME gave the posterior probabilities--the probability after applying a prior on letter frequencies--rather than the observed frequencies. These versions of MEME also gave the number of possible positions for the motif rather than the actual number of occurrences. The output from these earlier versions of MEME can be distinguished by "n=" rather than "nsites=" in the line preceding the matrix.
PSSM Format
The position-specific scoring matrix corresponding to the motif is printed for use by database search programs such as MAST. This matrix is a log-odds matrix calculated by taking 100 times the log (base 2) of the ratio p/f at each position in the motif where p is the probability of a particular letter at that position in the motif, and f is the background frequency of the letter (given in the command line summary section.) This is the same matrix that is used above in computing the p-values of the occurrences of the motif in the Sites and Block Diagrams sections. The scoring matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The scoring matrix is preceded by a line starting with "log-odds matrix:" and containing the length of the alphabet, width of the motif, number of characters in the training set, the scoring threshold (obsolete) and the motif E-value.
Note: The probability p used to compute the PSSM is not exactly the same as the corresponding value in the Position Specific Probability Matrix (PSPM). The values of p used to compute the PSSM take into account the motif prior, whereas the values in the PSPM are just the observed frequencies of letters in the motif sites.
BLOCKS Format
For use with BLOCKS tools.
FASTA Format
The FASTA format as described here.
Raw Format
Just the sites of the sequences that contributed to the motif. One site per line.
Sites

MEME displays the occurrences (sites) of the motif in the training set. The sites are shown aligned with each other, and the ten sequence positions preceding and following each site are also shown. Each site is identified by the name of the sequence where it occurs, the strand (if both strands of DNA sequences are being used), and the position in the sequence where the site begins. When the DNA strand is specified, '+' means the sequence in the training set, and '-' means the reverse complement of the training set sequence. (For '-' strands, the 'start' position is actually the position on the positive strand where the site ends.) The sites are listed in order of increasing statistical significance (p-value). The p-value of a site is computed from the the match score of the site with the position specific scoring matrix for the motif. The p-value gives the probability of a random string (generated from the background letter frequencies) having the same match score or higher. (This is referred to as the position p-value by the MAST algorithm.)

Block Diagrams

The occurrences of the motif in the training set sequences are shown as coloured blocks on a line. One diagram is printed for each sequence showing all the sites contributating to that motif in that sequence. The sequences are listed in the same order as in the input to make it easier to compare multiple block diagrams. Additionally the best p-value for the sequence/motif combination is listed though this may not be in ascending order as with the sites. The p-value of an occurrence is the probability of a single random subsequence the length of the motif, generated according to the 0-order background model, having a score at least as high as the score of the occurrence. When the DNA strand is specified '+', it means the motif appears from left to right on the sequence, and '-' means the motif appears from right to left on the complementary strand. A sequence position scale is shown at the end of each table of block diagrams.

Combined Block Diagrams

The motif occurrences shown in the motif summary may not be exactly the same as those reported in each motif section because only motifs with a position p-value of 0.0001 that don't overlap other, more significant motif occurrences are shown.

See the documentation for MAST output for the definition of position and combined p-values.